Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0643 and Dshi_0644 are separated by 293 nucleotides Dshi_0644 and Dshi_0645 are separated by 99 nucleotides
Dshi_0643: Dshi_0643 - short-chain dehydrogenase/reductase SDR (RefSeq), at 641,326 to 642,117
_0643
Dshi_0644: Dshi_0644 - excinuclease ABC, C subunit (RefSeq), at 642,411 to 644,306
_0644
Dshi_0645: Dshi_0645 - TRAP transporter solute receptor, TAXI family (RefSeq), at 644,406 to 645,413
_0645
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 642.107 kb on + strand at 642.164 kb on + strand at 642.170 kb on - strand at 642.344 kb on - strand at 642.369 kb on + strand at 642.389 kb on + strand at 642.630 kb on + strand, within Dshi_0644 at 642.720 kb on - strand, within Dshi_0644 at 642.722 kb on + strand, within Dshi_0644 at 642.915 kb on + strand, within Dshi_0644 at 642.993 kb on - strand, within Dshi_0644 at 643.077 kb on - strand, within Dshi_0644 at 643.108 kb on + strand, within Dshi_0644 at 643.200 kb on - strand, within Dshi_0644 at 643.368 kb on - strand, within Dshi_0644 at 643.378 kb on - strand, within Dshi_0644 at 643.657 kb on + strand, within Dshi_0644 at 643.657 kb on + strand, within Dshi_0644 at 643.756 kb on + strand, within Dshi_0644 at 643.963 kb on - strand, within Dshi_0644 at 644.020 kb on - strand, within Dshi_0644 at 644.178 kb on + strand at 644.375 kb on + strand at 644.377 kb on + strand at 644.420 kb on - strand at 644.425 kb on - strand at 644.458 kb on - strand at 644.552 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.571 kb on - strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.856 kb on + strand, within Dshi_0645 at 644.964 kb on - strand, within Dshi_0645 at 645.068 kb on + strand, within Dshi_0645 at 645.106 kb on - strand, within Dshi_0645 at 645.170 kb on + strand, within Dshi_0645 at 645.208 kb on + strand, within Dshi_0645
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 642,107 + -0.2 642,164 + -0.2 642,170 - -1.9 642,344 - -0.3 642,369 + +0.3 642,389 + -0.9 642,630 + Dshi_0644 0.12 -0.2 642,720 - Dshi_0644 0.16 -0.2 642,722 + Dshi_0644 0.16 -0.5 642,915 + Dshi_0644 0.27 +1.1 642,993 - Dshi_0644 0.31 -1.0 643,077 - Dshi_0644 0.35 -1.3 643,108 + Dshi_0644 0.37 -1.7 643,200 - Dshi_0644 0.42 -0.5 643,368 - Dshi_0644 0.50 -0.3 643,378 - Dshi_0644 0.51 -0.5 643,657 + Dshi_0644 0.66 -0.0 643,657 + Dshi_0644 0.66 -0.8 643,756 + Dshi_0644 0.71 -0.3 643,963 - Dshi_0644 0.82 -3.0 644,020 - Dshi_0644 0.85 -0.5 644,178 + -0.3 644,375 + +0.5 644,377 + +0.2 644,420 - -0.1 644,425 - +0.1 644,458 - -1.8 644,552 + Dshi_0645 0.14 +0.4 644,563 + Dshi_0645 0.16 -0.4 644,563 + Dshi_0645 0.16 -0.3 644,571 - Dshi_0645 0.16 -0.8 644,654 + Dshi_0645 0.25 +0.1 644,654 + Dshi_0645 0.25 -0.7 644,856 + Dshi_0645 0.45 +0.2 644,964 - Dshi_0645 0.55 -0.5 645,068 + Dshi_0645 0.66 -0.5 645,106 - Dshi_0645 0.69 +1.5 645,170 + Dshi_0645 0.76 +0.5 645,208 + Dshi_0645 0.80 +0.4
Or see this region's nucleotide sequence