Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0512

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0510 and Dshi_0511 are separated by 27 nucleotidesDshi_0511 and Dshi_0512 are separated by 11 nucleotidesDshi_0512 and Dshi_0513 are separated by 736 nucleotides Dshi_0510: Dshi_0510 - conserved hypothetical beta-lactamase (RefSeq), at 495,589 to 496,662 _0510 Dshi_0511: Dshi_0511 - hypothetical protein (RefSeq), at 496,690 to 496,893 _0511 Dshi_0512: Dshi_0512 - beta-lactamase domain protein (RefSeq), at 496,905 to 497,582 _0512 Dshi_0513: Dshi_0513 - transcriptional regulator, LuxR family (RefSeq), at 498,319 to 498,786 _0513 Position (kb) 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 495.935 kb on - strand, within Dshi_0510at 496.038 kb on - strand, within Dshi_0510at 496.043 kb on - strand, within Dshi_0510at 496.047 kb on - strand, within Dshi_0510at 496.106 kb on - strand, within Dshi_0510at 496.110 kb on + strand, within Dshi_0510at 496.118 kb on - strand, within Dshi_0510at 496.151 kb on - strand, within Dshi_0510at 496.151 kb on - strand, within Dshi_0510at 496.202 kb on + strand, within Dshi_0510at 496.223 kb on + strand, within Dshi_0510at 496.231 kb on - strand, within Dshi_0510at 496.235 kb on - strand, within Dshi_0510at 496.242 kb on - strand, within Dshi_0510at 496.336 kb on - strand, within Dshi_0510at 496.370 kb on - strand, within Dshi_0510at 496.422 kb on + strand, within Dshi_0510at 496.431 kb on + strand, within Dshi_0510at 496.437 kb on + strand, within Dshi_0510at 496.439 kb on - strand, within Dshi_0510at 496.470 kb on - strand, within Dshi_0510at 496.485 kb on + strand, within Dshi_0510at 496.539 kb on + strand, within Dshi_0510at 496.566 kb on + strandat 496.634 kb on + strandat 496.693 kb on + strandat 496.722 kb on + strand, within Dshi_0511at 496.735 kb on + strand, within Dshi_0511at 496.784 kb on - strand, within Dshi_0511at 496.853 kb on + strand, within Dshi_0511at 496.878 kb on + strandat 496.929 kb on - strandat 496.936 kb on + strandat 496.944 kb on - strandat 496.964 kb on - strandat 497.031 kb on - strand, within Dshi_0512at 497.084 kb on + strand, within Dshi_0512at 497.092 kb on - strand, within Dshi_0512at 497.097 kb on - strand, within Dshi_0512at 497.125 kb on + strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.186 kb on + strand, within Dshi_0512at 497.186 kb on + strand, within Dshi_0512at 497.191 kb on + strand, within Dshi_0512at 497.201 kb on + strand, within Dshi_0512at 497.233 kb on - strand, within Dshi_0512at 497.274 kb on - strand, within Dshi_0512at 497.291 kb on + strand, within Dshi_0512at 497.299 kb on - strand, within Dshi_0512at 497.326 kb on + strand, within Dshi_0512at 497.378 kb on + strand, within Dshi_0512at 497.489 kb on + strand, within Dshi_0512at 497.497 kb on - strand, within Dshi_0512at 497.497 kb on - strand, within Dshi_0512at 497.529 kb on + strandat 497.545 kb on - strandat 497.711 kb on - strandat 497.743 kb on - strandat 497.796 kb on + strandat 497.805 kb on + strandat 497.805 kb on + strandat 497.874 kb on - strandat 497.907 kb on - strandat 497.907 kb on - strandat 498.032 kb on + strandat 498.040 kb on - strandat 498.040 kb on - strandat 498.046 kb on + strandat 498.046 kb on + strandat 498.073 kb on - strandat 498.172 kb on + strandat 498.368 kb on + strand, within Dshi_0513at 498.431 kb on + strand, within Dshi_0513at 498.485 kb on - strand, within Dshi_0513at 498.504 kb on + strand, within Dshi_0513at 498.504 kb on + strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.539 kb on + strand, within Dshi_0513at 498.539 kb on + strand, within Dshi_0513at 498.574 kb on + strand, within Dshi_0513

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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495,935 - Dshi_0510 0.32 +0.6
496,038 - Dshi_0510 0.42 -0.0
496,043 - Dshi_0510 0.42 +0.2
496,047 - Dshi_0510 0.43 -0.1
496,106 - Dshi_0510 0.48 +0.8
496,110 + Dshi_0510 0.49 -0.4
496,118 - Dshi_0510 0.49 +0.1
496,151 - Dshi_0510 0.52 +0.8
496,151 - Dshi_0510 0.52 +0.3
496,202 + Dshi_0510 0.57 -0.8
496,223 + Dshi_0510 0.59 -0.0
496,231 - Dshi_0510 0.60 +0.2
496,235 - Dshi_0510 0.60 -0.0
496,242 - Dshi_0510 0.61 +0.4
496,336 - Dshi_0510 0.70 +0.2
496,370 - Dshi_0510 0.73 -2.8
496,422 + Dshi_0510 0.78 +0.2
496,431 + Dshi_0510 0.78 +0.9
496,437 + Dshi_0510 0.79 -0.3
496,439 - Dshi_0510 0.79 -1.4
496,470 - Dshi_0510 0.82 -0.6
496,485 + Dshi_0510 0.83 -1.3
496,539 + Dshi_0510 0.88 +1.1
496,566 + -0.4
496,634 + -0.3
496,693 + +0.4
496,722 + Dshi_0511 0.16 -0.7
496,735 + Dshi_0511 0.22 +0.3
496,784 - Dshi_0511 0.46 -0.0
496,853 + Dshi_0511 0.80 -0.2
496,878 + -0.9
496,929 - +2.4
496,936 + +0.1
496,944 - -0.2
496,964 - +0.2
497,031 - Dshi_0512 0.19 -0.5
497,084 + Dshi_0512 0.26 +0.1
497,092 - Dshi_0512 0.28 -0.2
497,097 - Dshi_0512 0.28 +0.2
497,125 + Dshi_0512 0.32 -0.0
497,133 - Dshi_0512 0.34 +0.4
497,133 - Dshi_0512 0.34 +0.3
497,133 - Dshi_0512 0.34 -0.5
497,133 - Dshi_0512 0.34 -0.0
497,186 + Dshi_0512 0.41 +1.1
497,186 + Dshi_0512 0.41 -0.1
497,191 + Dshi_0512 0.42 +1.4
497,201 + Dshi_0512 0.44 +0.0
497,233 - Dshi_0512 0.48 -0.4
497,274 - Dshi_0512 0.54 -0.1
497,291 + Dshi_0512 0.57 +1.0
497,299 - Dshi_0512 0.58 +1.1
497,326 + Dshi_0512 0.62 -0.3
497,378 + Dshi_0512 0.70 +0.9
497,489 + Dshi_0512 0.86 +1.3
497,497 - Dshi_0512 0.87 -1.6
497,497 - Dshi_0512 0.87 +0.2
497,529 + +0.3
497,545 - -0.4
497,711 - +0.3
497,743 - -1.7
497,796 + +0.7
497,805 + -1.5
497,805 + -0.4
497,874 - -0.9
497,907 - -0.3
497,907 - +0.2
498,032 + +1.6
498,040 - +0.5
498,040 - +1.0
498,046 + +0.2
498,046 + -0.3
498,073 - +0.5
498,172 + -0.7
498,368 + Dshi_0513 0.10 +0.4
498,431 + Dshi_0513 0.24 +0.3
498,485 - Dshi_0513 0.35 -0.2
498,504 + Dshi_0513 0.40 -0.1
498,504 + Dshi_0513 0.40 +0.1
498,512 - Dshi_0513 0.41 -0.6
498,512 - Dshi_0513 0.41 -0.9
498,512 - Dshi_0513 0.41 -0.4
498,539 + Dshi_0513 0.47 -0.4
498,539 + Dshi_0513 0.47 +0.0
498,574 + Dshi_0513 0.54 -0.8

Or see this region's nucleotide sequence