Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0282 and Dshi_0283 are separated by 80 nucleotides Dshi_0283 and Dshi_0284 are separated by 342 nucleotides
Dshi_0282: Dshi_0282 - hypothetical protein (RefSeq), at 283,471 to 283,737
_0282
Dshi_0283: Dshi_0283 - hypothetical protein (RefSeq), at 283,818 to 284,120
_0283
Dshi_0284: Dshi_0284 - hypothetical protein (RefSeq), at 284,463 to 285,113
_0284
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2 at 282.832 kb on + strand at 282.840 kb on - strand at 282.879 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.896 kb on + strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.909 kb on + strand at 282.913 kb on + strand at 282.950 kb on + strand at 282.950 kb on + strand at 282.950 kb on + strand at 282.958 kb on - strand at 282.988 kb on - strand at 283.034 kb on - strand at 283.041 kb on + strand at 283.053 kb on - strand at 283.057 kb on - strand at 283.060 kb on + strand at 283.064 kb on + strand at 283.066 kb on + strand at 283.066 kb on + strand at 283.072 kb on - strand at 283.073 kb on - strand at 283.092 kb on + strand at 283.104 kb on + strand at 283.115 kb on + strand at 283.115 kb on + strand at 283.122 kb on + strand at 283.123 kb on - strand at 283.130 kb on - strand at 283.157 kb on - strand at 283.214 kb on + strand at 283.219 kb on + strand at 283.219 kb on + strand at 283.219 kb on + strand at 283.219 kb on + strand at 283.226 kb on + strand at 283.226 kb on + strand at 283.226 kb on + strand at 283.227 kb on - strand at 283.234 kb on - strand at 283.234 kb on - strand at 283.257 kb on + strand at 283.257 kb on + strand at 283.263 kb on + strand at 283.337 kb on + strand at 283.351 kb on - strand at 283.353 kb on + strand at 283.358 kb on + strand at 283.371 kb on + strand at 283.379 kb on - strand at 283.382 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.390 kb on - strand at 283.390 kb on - strand at 283.394 kb on + strand at 283.397 kb on - strand at 283.404 kb on + strand at 283.404 kb on + strand at 283.457 kb on - strand at 283.504 kb on - strand, within Dshi_0282 at 283.522 kb on - strand, within Dshi_0282 at 283.542 kb on + strand, within Dshi_0282 at 283.550 kb on - strand, within Dshi_0282 at 283.566 kb on + strand, within Dshi_0282 at 283.577 kb on - strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.584 kb on - strand, within Dshi_0282 at 283.587 kb on - strand, within Dshi_0282 at 283.587 kb on - strand, within Dshi_0282 at 283.587 kb on - strand, within Dshi_0282 at 283.597 kb on - strand, within Dshi_0282 at 283.607 kb on + strand, within Dshi_0282 at 283.643 kb on + strand, within Dshi_0282 at 283.643 kb on + strand, within Dshi_0282 at 283.643 kb on + strand, within Dshi_0282 at 283.648 kb on + strand, within Dshi_0282 at 283.648 kb on + strand, within Dshi_0282 at 283.651 kb on - strand, within Dshi_0282 at 283.655 kb on - strand, within Dshi_0282 at 283.663 kb on - strand, within Dshi_0282 at 283.677 kb on + strand, within Dshi_0282 at 283.700 kb on + strand, within Dshi_0282 at 283.711 kb on + strand at 283.711 kb on + strand at 283.713 kb on - strand at 283.724 kb on - strand at 283.732 kb on + strand at 283.732 kb on + strand at 283.732 kb on + strand at 283.746 kb on + strand at 283.748 kb on + strand at 283.748 kb on + strand at 283.748 kb on + strand at 283.748 kb on + strand at 283.750 kb on + strand at 283.756 kb on - strand at 283.756 kb on - strand at 283.756 kb on - strand at 283.761 kb on + strand at 283.766 kb on + strand at 283.776 kb on + strand at 283.784 kb on - strand at 283.787 kb on - strand at 283.787 kb on - strand at 283.798 kb on + strand at 283.802 kb on + strand at 283.813 kb on + strand at 283.816 kb on - strand at 283.816 kb on - strand at 283.821 kb on - strand at 283.821 kb on - strand at 283.832 kb on + strand at 283.832 kb on + strand at 283.832 kb on + strand at 283.835 kb on - strand at 283.840 kb on - strand at 283.840 kb on - strand at 283.850 kb on + strand, within Dshi_0283 at 283.874 kb on + strand, within Dshi_0283 at 283.874 kb on + strand, within Dshi_0283 at 283.887 kb on + strand, within Dshi_0283 at 283.901 kb on + strand, within Dshi_0283 at 283.901 kb on + strand, within Dshi_0283 at 283.909 kb on - strand, within Dshi_0283 at 283.928 kb on + strand, within Dshi_0283 at 283.935 kb on + strand, within Dshi_0283 at 283.935 kb on + strand, within Dshi_0283 at 283.935 kb on + strand, within Dshi_0283 at 283.935 kb on + strand, within Dshi_0283 at 283.936 kb on - strand, within Dshi_0283 at 283.939 kb on - strand, within Dshi_0283 at 283.943 kb on - strand, within Dshi_0283 at 283.944 kb on - strand, within Dshi_0283 at 283.984 kb on + strand, within Dshi_0283 at 283.991 kb on + strand, within Dshi_0283 at 283.991 kb on + strand, within Dshi_0283 at 283.992 kb on - strand, within Dshi_0283 at 283.992 kb on - strand, within Dshi_0283 at 283.999 kb on - strand, within Dshi_0283 at 284.009 kb on + strand, within Dshi_0283 at 284.009 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.057 kb on + strand, within Dshi_0283 at 284.065 kb on - strand, within Dshi_0283 at 284.065 kb on - strand, within Dshi_0283 at 284.065 kb on - strand, within Dshi_0283 at 284.065 kb on - strand, within Dshi_0283 at 284.065 kb on - strand, within Dshi_0283 at 284.074 kb on + strand, within Dshi_0283 at 284.074 kb on + strand, within Dshi_0283 at 284.105 kb on - strand at 284.114 kb on + strand at 284.114 kb on + strand at 284.114 kb on + strand at 284.114 kb on + strand at 284.122 kb on - strand at 284.123 kb on + strand at 284.123 kb on + strand at 284.124 kb on + strand at 284.140 kb on + strand at 284.140 kb on + strand at 284.146 kb on + strand at 284.147 kb on + strand at 284.147 kb on + strand at 284.147 kb on + strand at 284.147 kb on + strand at 284.148 kb on - strand at 284.152 kb on + strand at 284.152 kb on + strand at 284.153 kb on + strand at 284.153 kb on + strand at 284.153 kb on + strand at 284.153 kb on + strand at 284.153 kb on + strand at 284.153 kb on + strand at 284.153 kb on + strand at 284.155 kb on - strand at 284.155 kb on - strand at 284.160 kb on + strand at 284.160 kb on - strand at 284.160 kb on - strand at 284.160 kb on - strand at 284.160 kb on - strand at 284.161 kb on - strand at 284.163 kb on + strand at 284.168 kb on - strand at 284.168 kb on - strand at 284.193 kb on + strand at 284.198 kb on + strand at 284.206 kb on - strand at 284.206 kb on - strand at 284.211 kb on + strand at 284.219 kb on - strand at 284.256 kb on - strand at 284.268 kb on + strand at 284.271 kb on - strand at 284.272 kb on - strand at 284.286 kb on + strand at 284.286 kb on + strand at 284.286 kb on + strand at 284.286 kb on + strand at 284.358 kb on + strand at 284.366 kb on + strand at 284.366 kb on + strand at 284.374 kb on - strand at 284.374 kb on - strand at 284.374 kb on - strand at 284.374 kb on - strand at 284.375 kb on + strand at 284.376 kb on + strand at 284.381 kb on + strand at 284.381 kb on + strand at 284.383 kb on + strand at 284.383 kb on + strand at 284.384 kb on - strand at 284.397 kb on + strand at 284.426 kb on + strand at 284.428 kb on + strand at 284.434 kb on + strand at 284.434 kb on - strand at 284.434 kb on - strand at 284.436 kb on - strand at 284.443 kb on - strand at 284.444 kb on - strand at 284.473 kb on - strand at 284.482 kb on + strand at 284.485 kb on - strand at 284.496 kb on + strand at 284.509 kb on + strand at 284.509 kb on + strand at 284.509 kb on + strand at 284.511 kb on + strand at 284.511 kb on + strand at 284.517 kb on - strand at 284.517 kb on - strand at 284.524 kb on + strand at 284.551 kb on + strand, within Dshi_0284 at 284.552 kb on + strand, within Dshi_0284 at 284.552 kb on - strand, within Dshi_0284 at 284.560 kb on - strand, within Dshi_0284 at 284.567 kb on + strand, within Dshi_0284 at 284.575 kb on - strand, within Dshi_0284 at 284.575 kb on - strand, within Dshi_0284 at 284.590 kb on - strand, within Dshi_0284 at 284.624 kb on + strand, within Dshi_0284 at 284.624 kb on - strand, within Dshi_0284 at 284.639 kb on + strand, within Dshi_0284 at 284.655 kb on - strand, within Dshi_0284 at 284.657 kb on - strand, within Dshi_0284 at 284.731 kb on - strand, within Dshi_0284 at 284.758 kb on - strand, within Dshi_0284 at 284.787 kb on + strand, within Dshi_0284 at 284.795 kb on + strand, within Dshi_0284 at 284.814 kb on - strand, within Dshi_0284 at 284.826 kb on + strand, within Dshi_0284 at 284.900 kb on + strand, within Dshi_0284 at 284.900 kb on + strand, within Dshi_0284 at 284.905 kb on + strand, within Dshi_0284 at 285.000 kb on + strand, within Dshi_0284 at 285.032 kb on + strand, within Dshi_0284 at 285.042 kb on - strand, within Dshi_0284 at 285.089 kb on + strand at 285.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 282,832 + +0.1 282,840 - -0.0 282,879 + +0.0 282,890 + -0.7 282,890 + +1.1 282,890 + -0.4 282,890 + -0.4 282,890 + -1.1 282,890 + -0.3 282,890 + -0.6 282,890 + +0.1 282,890 + +0.3 282,890 + -0.1 282,890 + +0.2 282,890 + -0.9 282,890 + +0.5 282,890 + +0.2 282,896 + -0.1 282,898 - +0.1 282,898 - -0.3 282,898 - -0.6 282,898 - -0.6 282,898 - +2.3 282,898 - +0.1 282,898 - -0.9 282,898 - +0.4 282,898 - -0.9 282,898 - -1.2 282,898 - +0.7 282,898 - +1.1 282,898 - -0.4 282,909 + -0.5 282,913 + +0.6 282,950 + -0.2 282,950 + -0.6 282,950 + -0.7 282,958 - +1.1 282,988 - +0.1 283,034 - -0.4 283,041 + +0.8 283,053 - -0.6 283,057 - -0.7 283,060 + -1.2 283,064 + +0.9 283,066 + +0.4 283,066 + -0.0 283,072 - -0.4 283,073 - +0.6 283,092 + +0.1 283,104 + +0.3 283,115 + -0.3 283,115 + -0.2 283,122 + +0.1 283,123 - -0.6 283,130 - +0.1 283,157 - +0.6 283,214 + +0.4 283,219 + -1.3 283,219 + +0.1 283,219 + -0.5 283,219 + -0.1 283,226 + -1.4 283,226 + -0.3 283,226 + +0.6 283,227 - +0.7 283,234 - -0.6 283,234 - -0.4 283,257 + -0.1 283,257 + +0.6 283,263 + -2.6 283,337 + +0.1 283,351 - -0.5 283,353 + -1.4 283,358 + +0.2 283,371 + -1.0 283,379 - +0.8 283,382 + +0.2 283,389 + +0.9 283,389 + -0.9 283,389 + -1.4 283,389 + +0.4 283,389 + +1.1 283,389 + +1.1 283,390 - +0.5 283,390 - -0.7 283,394 + +0.7 283,397 - +0.5 283,404 + +0.4 283,404 + -0.3 283,457 - -1.0 283,504 - Dshi_0282 0.12 +0.6 283,522 - Dshi_0282 0.19 -0.4 283,542 + Dshi_0282 0.27 +0.6 283,550 - Dshi_0282 0.30 -0.1 283,566 + Dshi_0282 0.36 +0.0 283,577 - Dshi_0282 0.40 +0.1 283,579 + Dshi_0282 0.40 -0.4 283,579 + Dshi_0282 0.40 -0.4 283,579 + Dshi_0282 0.40 +0.1 283,579 + Dshi_0282 0.40 -0.2 283,579 + Dshi_0282 0.40 +0.6 283,579 + Dshi_0282 0.40 -0.6 283,579 + Dshi_0282 0.40 -1.1 283,584 - Dshi_0282 0.42 +0.6 283,587 - Dshi_0282 0.43 +0.5 283,587 - Dshi_0282 0.43 +0.9 283,587 - Dshi_0282 0.43 +0.3 283,597 - Dshi_0282 0.47 -1.2 283,607 + Dshi_0282 0.51 -0.1 283,643 + Dshi_0282 0.64 -0.3 283,643 + Dshi_0282 0.64 +0.1 283,643 + Dshi_0282 0.64 -1.7 283,648 + Dshi_0282 0.66 -0.0 283,648 + Dshi_0282 0.66 +0.6 283,651 - Dshi_0282 0.67 -0.1 283,655 - Dshi_0282 0.69 +0.6 283,663 - Dshi_0282 0.72 -0.6 283,677 + Dshi_0282 0.77 +0.1 283,700 + Dshi_0282 0.86 -0.7 283,711 + +0.2 283,711 + -0.4 283,713 - +1.4 283,724 - -0.6 283,732 + +0.3 283,732 + +0.5 283,732 + -0.0 283,746 + +0.6 283,748 + +0.2 283,748 + -1.2 283,748 + -0.0 283,748 + -0.4 283,750 + +0.3 283,756 - +0.1 283,756 - +0.9 283,756 - +0.5 283,761 + -0.3 283,766 + -0.7 283,776 + +0.0 283,784 - -0.1 283,787 - +0.6 283,787 - -0.8 283,798 + -0.4 283,802 + +0.1 283,813 + -0.1 283,816 - -0.2 283,816 - +0.5 283,821 - +0.1 283,821 - +1.3 283,832 + +0.1 283,832 + +0.5 283,832 + +0.2 283,835 - +0.1 283,840 - +0.1 283,840 - -0.0 283,850 + Dshi_0283 0.11 -0.3 283,874 + Dshi_0283 0.18 +0.6 283,874 + Dshi_0283 0.18 +0.5 283,887 + Dshi_0283 0.23 -0.3 283,901 + Dshi_0283 0.27 +0.1 283,901 + Dshi_0283 0.27 -0.4 283,909 - Dshi_0283 0.30 +0.8 283,928 + Dshi_0283 0.36 +0.4 283,935 + Dshi_0283 0.39 -0.9 283,935 + Dshi_0283 0.39 +0.6 283,935 + Dshi_0283 0.39 +0.7 283,935 + Dshi_0283 0.39 -0.9 283,936 - Dshi_0283 0.39 +1.1 283,939 - Dshi_0283 0.40 +0.8 283,943 - Dshi_0283 0.41 -0.0 283,944 - Dshi_0283 0.42 +0.1 283,984 + Dshi_0283 0.55 -0.1 283,991 + Dshi_0283 0.57 +0.8 283,991 + Dshi_0283 0.57 -0.4 283,992 - Dshi_0283 0.57 -0.1 283,992 - Dshi_0283 0.57 +0.1 283,999 - Dshi_0283 0.60 -0.2 284,009 + Dshi_0283 0.63 -0.2 284,009 + Dshi_0283 0.63 -0.6 284,057 + Dshi_0283 0.79 -0.0 284,057 + Dshi_0283 0.79 +0.3 284,057 + Dshi_0283 0.79 -0.2 284,057 + Dshi_0283 0.79 -0.7 284,057 + Dshi_0283 0.79 +1.0 284,057 + Dshi_0283 0.79 +0.5 284,057 + Dshi_0283 0.79 +0.4 284,057 + Dshi_0283 0.79 +0.5 284,057 + Dshi_0283 0.79 +0.1 284,057 + Dshi_0283 0.79 -0.2 284,057 + Dshi_0283 0.79 +0.1 284,057 + Dshi_0283 0.79 +0.1 284,065 - Dshi_0283 0.82 +0.9 284,065 - Dshi_0283 0.82 +1.1 284,065 - Dshi_0283 0.82 +0.0 284,065 - Dshi_0283 0.82 +0.5 284,065 - Dshi_0283 0.82 +0.5 284,074 + Dshi_0283 0.84 +0.6 284,074 + Dshi_0283 0.84 +0.1 284,105 - -0.2 284,114 + -0.8 284,114 + +0.0 284,114 + +0.7 284,114 + +0.7 284,122 - -0.1 284,123 + -0.1 284,123 + -0.0 284,124 + +0.4 284,140 + +1.1 284,140 + -1.4 284,146 + -1.7 284,147 + +0.0 284,147 + +0.1 284,147 + -0.1 284,147 + -0.9 284,148 - -0.5 284,152 + -0.3 284,152 + +0.4 284,153 + -0.9 284,153 + -0.1 284,153 + +0.7 284,153 + -0.1 284,153 + -0.7 284,153 + -0.0 284,153 + +0.4 284,155 - +0.2 284,155 - -0.6 284,160 + +0.8 284,160 - -0.2 284,160 - +1.3 284,160 - -0.4 284,160 - +0.3 284,161 - +0.6 284,163 + +0.1 284,168 - +0.1 284,168 - +0.4 284,193 + -1.1 284,198 + +0.2 284,206 - +0.4 284,206 - -1.8 284,211 + -0.1 284,219 - -0.4 284,256 - -0.1 284,268 + -0.9 284,271 - -0.0 284,272 - -0.1 284,286 + +1.1 284,286 + +0.3 284,286 + -0.4 284,286 + -0.7 284,358 + +1.3 284,366 + -0.6 284,366 + -0.4 284,374 - -0.3 284,374 - -0.4 284,374 - -0.4 284,374 - -0.7 284,375 + -0.4 284,376 + +0.0 284,381 + -0.2 284,381 + +0.4 284,383 + +0.7 284,383 + +0.2 284,384 - -0.2 284,397 + -0.1 284,426 + +2.1 284,428 + +0.5 284,434 + -0.2 284,434 - +0.6 284,434 - -0.9 284,436 - +0.2 284,443 - -0.2 284,444 - +1.4 284,473 - +0.4 284,482 + +0.4 284,485 - -0.7 284,496 + -0.3 284,509 + -0.2 284,509 + +0.3 284,509 + +0.7 284,511 + -0.4 284,511 + +0.5 284,517 - -1.5 284,517 - -0.3 284,524 + +0.1 284,551 + Dshi_0284 0.14 +0.3 284,552 + Dshi_0284 0.14 -0.9 284,552 - Dshi_0284 0.14 -0.2 284,560 - Dshi_0284 0.15 -0.3 284,567 + Dshi_0284 0.16 +0.4 284,575 - Dshi_0284 0.17 -0.3 284,575 - Dshi_0284 0.17 +0.9 284,590 - Dshi_0284 0.20 -0.5 284,624 + Dshi_0284 0.25 -0.2 284,624 - Dshi_0284 0.25 +0.1 284,639 + Dshi_0284 0.27 -0.7 284,655 - Dshi_0284 0.29 +0.2 284,657 - Dshi_0284 0.30 -0.2 284,731 - Dshi_0284 0.41 +0.8 284,758 - Dshi_0284 0.45 +0.8 284,787 + Dshi_0284 0.50 +0.9 284,795 + Dshi_0284 0.51 -0.9 284,814 - Dshi_0284 0.54 +0.8 284,826 + Dshi_0284 0.56 +1.6 284,900 + Dshi_0284 0.67 -1.1 284,900 + Dshi_0284 0.67 -0.1 284,905 + Dshi_0284 0.68 -0.1 285,000 + Dshi_0284 0.82 +0.4 285,032 + Dshi_0284 0.87 -0.1 285,042 - Dshi_0284 0.89 +1.3 285,089 + -0.7 285,092 - +0.4
Or see this region's nucleotide sequence