Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0213 and Dshi_0214 are separated by 122 nucleotides Dshi_0214 and Dshi_0215 are separated by 160 nucleotides
Dshi_0213: Dshi_0213 - Phosphoenolpyruvate carboxykinase (ATP) (RefSeq), at 210,410 to 212,008
_0213
Dshi_0214: Dshi_0214 - 3-hydroxybutyryl-CoA dehydrogenase (RefSeq), at 212,131 to 213,006
_0214
Dshi_0215: Dshi_0215 - hypothetical protein (RefSeq), at 213,167 to 214,024
_0215
Position (kb) 212
213
214 Strain fitness (log2 ratio) -2
-1
0
1 at 211.276 kb on - strand, within Dshi_0213 at 211.565 kb on - strand, within Dshi_0213 at 211.613 kb on + strand, within Dshi_0213 at 211.897 kb on - strand at 211.930 kb on + strand at 211.968 kb on - strand at 211.992 kb on - strand at 211.993 kb on + strand at 212.020 kb on + strand at 212.119 kb on - strand at 212.127 kb on - strand at 212.388 kb on - strand, within Dshi_0214 at 212.416 kb on + strand, within Dshi_0214 at 212.602 kb on - strand, within Dshi_0214 at 212.767 kb on - strand, within Dshi_0214 at 212.778 kb on + strand, within Dshi_0214 at 212.778 kb on + strand, within Dshi_0214 at 212.886 kb on + strand, within Dshi_0214 at 212.894 kb on - strand, within Dshi_0214 at 212.920 kb on - strand at 212.922 kb on + strand at 212.929 kb on + strand at 212.929 kb on + strand at 212.929 kb on + strand at 213.003 kb on - strand at 213.012 kb on + strand at 213.013 kb on + strand at 213.020 kb on - strand at 213.034 kb on + strand at 213.035 kb on + strand at 213.135 kb on + strand at 213.179 kb on + strand at 213.187 kb on - strand at 213.246 kb on - strand at 213.254 kb on - strand, within Dshi_0215 at 213.259 kb on - strand, within Dshi_0215 at 213.268 kb on - strand, within Dshi_0215 at 213.272 kb on + strand, within Dshi_0215 at 213.344 kb on - strand, within Dshi_0215 at 213.346 kb on + strand, within Dshi_0215 at 213.353 kb on + strand, within Dshi_0215 at 213.361 kb on - strand, within Dshi_0215 at 213.413 kb on - strand, within Dshi_0215 at 213.449 kb on - strand, within Dshi_0215 at 213.535 kb on - strand, within Dshi_0215 at 213.561 kb on + strand, within Dshi_0215 at 213.684 kb on - strand, within Dshi_0215 at 213.696 kb on + strand, within Dshi_0215 at 213.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 211,276 - Dshi_0213 0.54 -0.1 211,565 - Dshi_0213 0.72 +0.2 211,613 + Dshi_0213 0.75 +1.0 211,897 - -1.1 211,930 + +0.5 211,968 - +1.1 211,992 - +0.6 211,993 + -1.2 212,020 + -0.9 212,119 - -0.2 212,127 - -1.3 212,388 - Dshi_0214 0.29 +0.8 212,416 + Dshi_0214 0.33 +1.5 212,602 - Dshi_0214 0.54 +0.9 212,767 - Dshi_0214 0.73 +0.1 212,778 + Dshi_0214 0.74 -0.3 212,778 + Dshi_0214 0.74 +0.4 212,886 + Dshi_0214 0.86 +0.7 212,894 - Dshi_0214 0.87 +0.2 212,920 - +0.4 212,922 + -0.1 212,929 + -0.1 212,929 + +0.2 212,929 + -0.1 213,003 - -0.7 213,012 + +0.2 213,013 + -0.4 213,020 - +0.2 213,034 + -0.2 213,035 + +0.4 213,135 + -0.7 213,179 + -0.4 213,187 - +0.6 213,246 - -1.2 213,254 - Dshi_0215 0.10 -0.7 213,259 - Dshi_0215 0.11 -0.9 213,268 - Dshi_0215 0.12 -0.5 213,272 + Dshi_0215 0.12 -1.1 213,344 - Dshi_0215 0.21 -1.6 213,346 + Dshi_0215 0.21 -0.8 213,353 + Dshi_0215 0.22 -0.4 213,361 - Dshi_0215 0.23 -0.6 213,413 - Dshi_0215 0.29 -0.4 213,449 - Dshi_0215 0.33 -1.8 213,535 - Dshi_0215 0.43 -0.1 213,561 + Dshi_0215 0.46 -0.1 213,684 - Dshi_0215 0.60 +0.1 213,696 + Dshi_0215 0.62 -1.5 213,978 + +1.0
Or see this region's nucleotide sequence