Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_949

Experiment: selenate 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_948 and Pf6N2E2_949 overlap by 1 nucleotidesPf6N2E2_949 and Pf6N2E2_950 are separated by 516 nucleotides Pf6N2E2_948 - Multidrug efflux transporter MexF, at 1,115,446 to 1,118,637 _948 Pf6N2E2_949 - Outer membrane protein OprN, at 1,118,637 to 1,120,055 _949 Pf6N2E2_950 - Type IV secretory pathway, VirB4 components, at 1,120,572 to 1,123,322 _950 Position (kb) 1118 1119 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1117.718 kb on + strand, within Pf6N2E2_948at 1117.719 kb on - strand, within Pf6N2E2_948at 1117.719 kb on - strand, within Pf6N2E2_948at 1117.719 kb on - strand, within Pf6N2E2_948at 1117.726 kb on + strand, within Pf6N2E2_948at 1117.726 kb on + strand, within Pf6N2E2_948at 1117.727 kb on - strand, within Pf6N2E2_948at 1117.727 kb on - strand, within Pf6N2E2_948at 1117.727 kb on - strand, within Pf6N2E2_948at 1117.727 kb on - strand, within Pf6N2E2_948at 1117.727 kb on - strand, within Pf6N2E2_948at 1117.741 kb on + strand, within Pf6N2E2_948at 1117.741 kb on + strand, within Pf6N2E2_948at 1117.741 kb on + strand, within Pf6N2E2_948at 1117.741 kb on + strand, within Pf6N2E2_948at 1117.742 kb on - strand, within Pf6N2E2_948at 1117.742 kb on - strand, within Pf6N2E2_948at 1117.742 kb on - strand, within Pf6N2E2_948at 1117.775 kb on - strand, within Pf6N2E2_948at 1117.775 kb on - strand, within Pf6N2E2_948at 1117.918 kb on - strand, within Pf6N2E2_948at 1117.918 kb on - strand, within Pf6N2E2_948at 1117.924 kb on + strand, within Pf6N2E2_948at 1118.035 kb on - strand, within Pf6N2E2_948at 1118.063 kb on - strand, within Pf6N2E2_948at 1118.063 kb on - strand, within Pf6N2E2_948at 1118.258 kb on + strand, within Pf6N2E2_948at 1118.258 kb on + strand, within Pf6N2E2_948at 1118.259 kb on - strand, within Pf6N2E2_948at 1118.259 kb on - strand, within Pf6N2E2_948at 1118.265 kb on - strand, within Pf6N2E2_948at 1118.265 kb on - strand, within Pf6N2E2_948at 1118.598 kb on + strandat 1118.598 kb on + strandat 1118.598 kb on + strandat 1118.602 kb on - strandat 1118.654 kb on - strandat 1118.709 kb on + strandat 1118.764 kb on - strandat 1118.813 kb on + strand, within Pf6N2E2_949at 1118.814 kb on - strand, within Pf6N2E2_949at 1118.814 kb on - strand, within Pf6N2E2_949at 1119.117 kb on + strand, within Pf6N2E2_949at 1119.117 kb on + strand, within Pf6N2E2_949at 1119.117 kb on + strand, within Pf6N2E2_949at 1119.395 kb on + strand, within Pf6N2E2_949at 1119.659 kb on + strand, within Pf6N2E2_949at 1119.659 kb on + strand, within Pf6N2E2_949at 1119.660 kb on - strand, within Pf6N2E2_949at 1119.741 kb on + strand, within Pf6N2E2_949at 1119.742 kb on - strand, within Pf6N2E2_949at 1119.742 kb on - strand, within Pf6N2E2_949at 1119.742 kb on - strand, within Pf6N2E2_949at 1119.742 kb on - strand, within Pf6N2E2_949at 1119.879 kb on + strand, within Pf6N2E2_949at 1119.880 kb on - strand, within Pf6N2E2_949at 1119.900 kb on + strand, within Pf6N2E2_949at 1119.901 kb on - strand, within Pf6N2E2_949at 1119.996 kb on + strandat 1119.997 kb on - strandat 1119.997 kb on - strandat 1119.998 kb on + strandat 1119.999 kb on - strandat 1119.999 kb on - strandat 1120.091 kb on + strandat 1120.112 kb on + strandat 1120.210 kb on - strandat 1120.215 kb on + strandat 1120.216 kb on - strandat 1120.303 kb on + strandat 1120.352 kb on + strandat 1120.353 kb on - strandat 1120.449 kb on + strandat 1120.449 kb on + strandat 1120.450 kb on - strandat 1120.550 kb on + strandat 1120.573 kb on + strandat 1120.573 kb on + strandat 1120.708 kb on + strandat 1120.774 kb on + strandat 1120.774 kb on + strandat 1120.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction selenate 0.5 M
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1,117,718 + Pf6N2E2_948 0.71 +1.7
1,117,719 - Pf6N2E2_948 0.71 -1.5
1,117,719 - Pf6N2E2_948 0.71 -1.7
1,117,719 - Pf6N2E2_948 0.71 -0.3
1,117,726 + Pf6N2E2_948 0.71 +0.7
1,117,726 + Pf6N2E2_948 0.71 -0.3
1,117,727 - Pf6N2E2_948 0.71 -0.4
1,117,727 - Pf6N2E2_948 0.71 -1.6
1,117,727 - Pf6N2E2_948 0.71 +0.6
1,117,727 - Pf6N2E2_948 0.71 +0.4
1,117,727 - Pf6N2E2_948 0.71 -0.1
1,117,741 + Pf6N2E2_948 0.72 -0.3
1,117,741 + Pf6N2E2_948 0.72 +0.6
1,117,741 + Pf6N2E2_948 0.72 +1.3
1,117,741 + Pf6N2E2_948 0.72 +0.1
1,117,742 - Pf6N2E2_948 0.72 +0.3
1,117,742 - Pf6N2E2_948 0.72 -0.3
1,117,742 - Pf6N2E2_948 0.72 +0.7
1,117,775 - Pf6N2E2_948 0.73 +0.3
1,117,775 - Pf6N2E2_948 0.73 +1.6
1,117,918 - Pf6N2E2_948 0.77 +0.9
1,117,918 - Pf6N2E2_948 0.77 +0.7
1,117,924 + Pf6N2E2_948 0.78 -1.2
1,118,035 - Pf6N2E2_948 0.81 -0.2
1,118,063 - Pf6N2E2_948 0.82 +1.5
1,118,063 - Pf6N2E2_948 0.82 +0.1
1,118,258 + Pf6N2E2_948 0.88 +1.1
1,118,258 + Pf6N2E2_948 0.88 -1.0
1,118,259 - Pf6N2E2_948 0.88 +0.2
1,118,259 - Pf6N2E2_948 0.88 -1.1
1,118,265 - Pf6N2E2_948 0.88 +1.3
1,118,265 - Pf6N2E2_948 0.88 -0.9
1,118,598 + +1.3
1,118,598 + +1.9
1,118,598 + -0.1
1,118,602 - +0.3
1,118,654 - +0.9
1,118,709 + -2.9
1,118,764 - -1.5
1,118,813 + Pf6N2E2_949 0.12 -0.1
1,118,814 - Pf6N2E2_949 0.12 -0.4
1,118,814 - Pf6N2E2_949 0.12 +0.6
1,119,117 + Pf6N2E2_949 0.34 +0.3
1,119,117 + Pf6N2E2_949 0.34 -0.8
1,119,117 + Pf6N2E2_949 0.34 +0.7
1,119,395 + Pf6N2E2_949 0.53 +0.9
1,119,659 + Pf6N2E2_949 0.72 -1.3
1,119,659 + Pf6N2E2_949 0.72 +0.7
1,119,660 - Pf6N2E2_949 0.72 -1.1
1,119,741 + Pf6N2E2_949 0.78 -0.3
1,119,742 - Pf6N2E2_949 0.78 -0.2
1,119,742 - Pf6N2E2_949 0.78 -0.7
1,119,742 - Pf6N2E2_949 0.78 -1.4
1,119,742 - Pf6N2E2_949 0.78 +0.3
1,119,879 + Pf6N2E2_949 0.88 -0.7
1,119,880 - Pf6N2E2_949 0.88 +0.5
1,119,900 + Pf6N2E2_949 0.89 -1.5
1,119,901 - Pf6N2E2_949 0.89 -1.1
1,119,996 + +0.0
1,119,997 - -0.6
1,119,997 - +0.7
1,119,998 + +0.6
1,119,999 - -1.0
1,119,999 - +0.3
1,120,091 + +0.3
1,120,112 + +1.3
1,120,210 - -1.2
1,120,215 + +0.4
1,120,216 - +0.4
1,120,303 + +2.6
1,120,352 + +0.6
1,120,353 - +0.4
1,120,449 + +0.3
1,120,449 + -1.3
1,120,450 - -0.5
1,120,550 + -1.3
1,120,573 + -0.3
1,120,573 + +0.6
1,120,708 + +0.0
1,120,774 + -0.6
1,120,774 + +0.1
1,120,774 + +0.1

Or see this region's nucleotide sequence