Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_883

Experiment: selenate 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_882 and Pf6N2E2_883 are separated by 31 nucleotidesPf6N2E2_883 and Pf6N2E2_884 are separated by 95 nucleotides Pf6N2E2_882 - FIG00961517: hypothetical protein, at 1,031,567 to 1,032,928 _882 Pf6N2E2_883 - Major myo-inositol transporter IolT, at 1,032,960 to 1,034,378 _883 Pf6N2E2_884 - Inosose isomerase (EC 5.3.99.-), at 1,034,474 to 1,035,433 _884 Position (kb) 1032 1033 1034 1035Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1032.012 kb on - strand, within Pf6N2E2_882at 1032.186 kb on - strand, within Pf6N2E2_882at 1032.320 kb on + strand, within Pf6N2E2_882at 1032.320 kb on + strand, within Pf6N2E2_882at 1032.321 kb on - strand, within Pf6N2E2_882at 1032.358 kb on + strand, within Pf6N2E2_882at 1032.359 kb on - strand, within Pf6N2E2_882at 1032.638 kb on + strand, within Pf6N2E2_882at 1032.639 kb on - strand, within Pf6N2E2_882at 1032.908 kb on - strandat 1032.908 kb on - strandat 1032.908 kb on - strandat 1032.967 kb on + strandat 1032.968 kb on - strandat 1032.968 kb on - strandat 1032.968 kb on - strandat 1032.968 kb on - strandat 1032.968 kb on - strandat 1033.460 kb on + strand, within Pf6N2E2_883at 1033.461 kb on - strand, within Pf6N2E2_883at 1033.505 kb on - strand, within Pf6N2E2_883at 1033.505 kb on - strand, within Pf6N2E2_883at 1033.539 kb on - strand, within Pf6N2E2_883at 1033.670 kb on - strand, within Pf6N2E2_883at 1033.670 kb on - strand, within Pf6N2E2_883at 1033.673 kb on - strand, within Pf6N2E2_883at 1033.756 kb on + strand, within Pf6N2E2_883at 1033.756 kb on + strand, within Pf6N2E2_883at 1033.757 kb on - strand, within Pf6N2E2_883at 1033.757 kb on - strand, within Pf6N2E2_883at 1033.757 kb on - strand, within Pf6N2E2_883at 1033.757 kb on - strand, within Pf6N2E2_883at 1033.757 kb on - strand, within Pf6N2E2_883at 1033.757 kb on - strand, within Pf6N2E2_883at 1034.090 kb on + strand, within Pf6N2E2_883at 1034.091 kb on - strand, within Pf6N2E2_883at 1034.157 kb on + strand, within Pf6N2E2_883at 1034.215 kb on + strand, within Pf6N2E2_883at 1034.216 kb on - strand, within Pf6N2E2_883at 1034.216 kb on - strand, within Pf6N2E2_883at 1034.257 kb on - strandat 1034.257 kb on - strandat 1034.300 kb on - strandat 1034.328 kb on + strandat 1034.329 kb on - strandat 1034.329 kb on - strandat 1034.329 kb on - strandat 1034.333 kb on - strandat 1034.333 kb on - strandat 1034.354 kb on + strandat 1034.369 kb on + strandat 1034.448 kb on + strandat 1034.448 kb on + strandat 1034.448 kb on + strandat 1034.448 kb on + strandat 1034.448 kb on + strandat 1034.448 kb on + strandat 1034.448 kb on + strandat 1034.449 kb on - strandat 1034.525 kb on + strandat 1034.526 kb on - strandat 1034.677 kb on - strand, within Pf6N2E2_884at 1034.677 kb on - strand, within Pf6N2E2_884at 1034.698 kb on + strand, within Pf6N2E2_884at 1034.698 kb on + strand, within Pf6N2E2_884at 1034.781 kb on + strand, within Pf6N2E2_884at 1034.781 kb on + strand, within Pf6N2E2_884at 1034.781 kb on + strand, within Pf6N2E2_884at 1034.782 kb on - strand, within Pf6N2E2_884at 1034.782 kb on - strand, within Pf6N2E2_884at 1034.888 kb on + strand, within Pf6N2E2_884at 1034.889 kb on - strand, within Pf6N2E2_884at 1034.914 kb on - strand, within Pf6N2E2_884at 1034.981 kb on + strand, within Pf6N2E2_884at 1034.981 kb on + strand, within Pf6N2E2_884at 1034.981 kb on + strand, within Pf6N2E2_884at 1034.982 kb on - strand, within Pf6N2E2_884at 1035.002 kb on + strand, within Pf6N2E2_884at 1035.002 kb on + strand, within Pf6N2E2_884at 1035.003 kb on - strand, within Pf6N2E2_884

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Per-strain Table

Position Strand Gene LocusTag Fraction selenate 0.5 M
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1,032,012 - Pf6N2E2_882 0.33 -1.3
1,032,186 - Pf6N2E2_882 0.45 -0.5
1,032,320 + Pf6N2E2_882 0.55 -2.0
1,032,320 + Pf6N2E2_882 0.55 -0.6
1,032,321 - Pf6N2E2_882 0.55 -0.1
1,032,358 + Pf6N2E2_882 0.58 +0.1
1,032,359 - Pf6N2E2_882 0.58 +0.3
1,032,638 + Pf6N2E2_882 0.79 +0.1
1,032,639 - Pf6N2E2_882 0.79 +0.3
1,032,908 - -1.5
1,032,908 - -1.0
1,032,908 - -2.7
1,032,967 + -0.1
1,032,968 - -0.4
1,032,968 - -0.0
1,032,968 - -0.4
1,032,968 - -0.7
1,032,968 - +1.9
1,033,460 + Pf6N2E2_883 0.35 -0.6
1,033,461 - Pf6N2E2_883 0.35 -0.5
1,033,505 - Pf6N2E2_883 0.38 +0.7
1,033,505 - Pf6N2E2_883 0.38 -0.1
1,033,539 - Pf6N2E2_883 0.41 -0.1
1,033,670 - Pf6N2E2_883 0.50 -1.2
1,033,670 - Pf6N2E2_883 0.50 +0.9
1,033,673 - Pf6N2E2_883 0.50 -0.1
1,033,756 + Pf6N2E2_883 0.56 -0.3
1,033,756 + Pf6N2E2_883 0.56 -0.3
1,033,757 - Pf6N2E2_883 0.56 -1.0
1,033,757 - Pf6N2E2_883 0.56 +0.8
1,033,757 - Pf6N2E2_883 0.56 -0.0
1,033,757 - Pf6N2E2_883 0.56 -0.1
1,033,757 - Pf6N2E2_883 0.56 -1.4
1,033,757 - Pf6N2E2_883 0.56 +1.3
1,034,090 + Pf6N2E2_883 0.80 -1.7
1,034,091 - Pf6N2E2_883 0.80 +1.6
1,034,157 + Pf6N2E2_883 0.84 -1.2
1,034,215 + Pf6N2E2_883 0.88 -0.3
1,034,216 - Pf6N2E2_883 0.89 -0.0
1,034,216 - Pf6N2E2_883 0.89 -0.5
1,034,257 - +0.7
1,034,257 - -1.8
1,034,300 - +0.1
1,034,328 + -0.7
1,034,329 - +0.1
1,034,329 - -0.4
1,034,329 - -2.8
1,034,333 - +0.6
1,034,333 - -0.5
1,034,354 + +0.5
1,034,369 + +0.1
1,034,448 + +0.9
1,034,448 + -0.3
1,034,448 + -0.2
1,034,448 + -0.7
1,034,448 + -0.7
1,034,448 + +0.8
1,034,448 + -0.7
1,034,449 - +0.5
1,034,525 + -0.7
1,034,526 - +1.3
1,034,677 - Pf6N2E2_884 0.21 -2.0
1,034,677 - Pf6N2E2_884 0.21 +0.2
1,034,698 + Pf6N2E2_884 0.23 +0.1
1,034,698 + Pf6N2E2_884 0.23 -0.1
1,034,781 + Pf6N2E2_884 0.32 +0.1
1,034,781 + Pf6N2E2_884 0.32 -0.6
1,034,781 + Pf6N2E2_884 0.32 +1.0
1,034,782 - Pf6N2E2_884 0.32 -0.3
1,034,782 - Pf6N2E2_884 0.32 -0.6
1,034,888 + Pf6N2E2_884 0.43 +0.1
1,034,889 - Pf6N2E2_884 0.43 -0.7
1,034,914 - Pf6N2E2_884 0.46 +0.5
1,034,981 + Pf6N2E2_884 0.53 -1.7
1,034,981 + Pf6N2E2_884 0.53 +2.3
1,034,981 + Pf6N2E2_884 0.53 -0.7
1,034,982 - Pf6N2E2_884 0.53 -0.5
1,035,002 + Pf6N2E2_884 0.55 +2.7
1,035,002 + Pf6N2E2_884 0.55 -1.9
1,035,003 - Pf6N2E2_884 0.55 -0.1

Or see this region's nucleotide sequence