Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28960

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
6,437,266	+				+0.4
6,437,282	+				-0.3
6,437,283	-				+0.8
6,437,284	+				+0.7
6,437,284	+				-1.9
6,437,284	+				-0.2
6,437,284	+				+0.6
6,437,284	+				-0.1
6,437,284	+				+0.9
6,437,284	+				-2.3
6,437,284	+				-0.4
6,437,284	+				-1.4
6,437,284	+				+1.4
6,437,284	+				-0.4
6,437,284	+				-1.6
6,437,284	+				+0.0
6,437,284	+				+0.7
6,437,284	+				+0.9
6,437,284	+				+0.0
6,437,284	+				-1.8
6,437,284	+				+0.4
6,437,284	+				-0.1
6,437,284	+				-0.2
6,437,284	+				+0.0
6,437,284	+				-0.1
6,437,284	+				-0.3
6,437,284	+				+0.8
6,437,284	+				-1.2
6,437,284	+				+0.5
6,437,284	+				+1.7
6,437,284	+				+0.2
6,437,284	+				+0.9
6,437,284	+				+0.7
6,437,284	+				-0.6
6,437,284	+				-1.6
6,437,284	+				+1.3
6,437,284	+				+0.4
6,437,284	+				+0.0
6,437,284	+				+0.4
6,437,284	+				-1.2
6,437,284	+				+0.3
6,437,284	+				-1.4
6,437,284	+				-0.9
6,437,284	+				-0.9
6,437,284	+				+0.0
6,437,284	+				+1.0
6,437,284	+				-1.2
6,437,284	+				-2.1
6,437,284	+				+0.6
6,437,284	+				+0.3
6,437,284	+				+0.3
6,437,284	+				-2.7
6,437,284	+				-1.1
6,437,284	+				+0.2
6,437,284	+				+2.0
6,437,284	+				-0.1
6,437,284	+				-0.4
6,437,285	-				-0.6
6,437,285	-				+0.4
6,437,285	-				-3.3
6,437,285	-				-0.1
6,437,285	-				-0.1
6,437,285	-				+0.2
6,437,285	-				-0.8
6,437,285	-				+0.1
6,437,285	-				-3.0
6,437,285	-				+0.4
6,437,285	-				-1.1
6,437,285	-				+0.3
6,437,285	-				+1.6
6,437,285	-				-1.8
6,437,285	-				-0.2
6,437,285	-				+2.8
6,437,285	-				-0.1
6,437,285	-				+0.5
6,437,285	-				-1.2
6,437,285	-				+0.1
6,437,285	-				+0.8
6,437,285	-				-1.3
6,437,285	-				+1.0
6,437,285	-				-0.1
6,437,285	-				-0.5
6,437,285	-				-2.5
6,437,285	-				-0.5
6,437,285	-				-0.2
6,437,285	-				+0.6
6,437,285	-				-1.5
6,437,285	-				-0.0
6,437,285	-				-0.6
6,437,285	-				-0.0
6,437,285	-				-0.0
6,437,285	-				+0.2
6,437,285	-				+0.3
6,437,314	-				-2.8
6,437,314	-				-0.5
6,437,394	+		PFLU_RS28950	0.15	+0.6
6,437,394	+		PFLU_RS28950	0.15	-0.4
6,437,395	-		PFLU_RS28950	0.15	-0.8
6,437,395	-		PFLU_RS28950	0.15	-1.7
6,437,395	-		PFLU_RS28950	0.15	-0.6
6,437,412	+		PFLU_RS28950	0.18	+1.3
6,437,412	+		PFLU_RS28950	0.18	+0.3
6,437,412	+		PFLU_RS28950	0.18	-2.4
6,437,412	+		PFLU_RS28950	0.18	-1.3
6,437,412	+		PFLU_RS28950	0.18	-0.2
6,437,412	+		PFLU_RS28950	0.18	+0.5
6,437,413	-		PFLU_RS28950	0.18	-3.3
6,437,413	-		PFLU_RS28950	0.18	-0.8
6,437,413	-		PFLU_RS28950	0.18	-1.0
6,437,413	-		PFLU_RS28950	0.18	-0.5
6,437,413	-		PFLU_RS28950	0.18	-1.2
6,437,413	-		PFLU_RS28950	0.18	+1.0
6,437,413	-		PFLU_RS28950	0.18	-1.7
6,437,413	-		PFLU_RS28950	0.18	-0.2
6,437,413	-		PFLU_RS28950	0.18	+0.3
6,437,413	-		PFLU_RS28950	0.18	-0.4
6,437,413	-		PFLU_RS28950	0.18	+0.2
6,437,413	-		PFLU_RS28950	0.18	+0.6
6,437,413	-		PFLU_RS28950	0.18	+1.7
6,437,413	-		PFLU_RS28950	0.18	-0.1
6,437,413	-		PFLU_RS28950	0.18	-0.8
6,437,413	-		PFLU_RS28950	0.18	-1.8
6,437,680	+		PFLU_RS28950	0.66	-0.6
6,437,847	+				-0.8
6,437,863	+				+0.6
6,437,864	-				-1.2
6,437,864	-				-1.1
6,437,864	-				+0.5
6,437,864	-				+1.7
6,437,877	+				+0.7
6,437,877	+				+0.1
6,437,877	+				+0.6
6,437,878	-				-0.7
6,437,878	-				-2.3
6,437,900	+				-2.4
6,437,901	-				-1.5
6,437,901	-				+0.3
6,437,901	-				-1.8
6,437,901	-				-0.6
6,437,915	+				+0.9
6,437,915	+				-0.1
6,437,915	+				-0.2
6,437,915	+				-1.2
6,437,916	-				+0.9
6,437,916	-				+1.8
6,437,916	-				+0.5
6,437,916	-				+0.1
6,437,916	-				+0.4
6,437,921	-				+0.0
6,437,935	+				+1.1
6,437,935	+				-0.3
6,437,935	+				+0.3
6,437,935	+				-0.3
6,437,935	+				+2.0
6,437,935	+				+1.1
6,437,936	-				+1.1
6,437,936	-				-3.6
6,437,936	-				+1.5
6,437,936	-				+2.3
6,437,936	-				+0.6
6,437,936	-				-0.7
6,437,936	-				-1.1
6,437,936	-				-0.2
6,437,944	+				+0.2
6,437,944	+				+0.9
6,437,945	-				-1.9
6,437,945	-				+0.9
6,438,054	+		PFLU_RS28955	0.22	-2.7
6,438,054	+		PFLU_RS28955	0.22	+1.1
6,438,054	+		PFLU_RS28955	0.22	+1.0
6,438,054	+		PFLU_RS28955	0.22	+0.4
6,438,054	+		PFLU_RS28955	0.22	+0.1
6,438,055	-		PFLU_RS28955	0.22	-2.9
6,438,055	-		PFLU_RS28955	0.22	-0.2
6,438,055	-		PFLU_RS28955	0.22	-0.2
6,438,055	-		PFLU_RS28955	0.22	-3.1
6,438,055	-		PFLU_RS28955	0.22	+0.6
6,438,055	-		PFLU_RS28955	0.22	-0.6
6,438,055	-		PFLU_RS28955	0.22	-0.6
6,438,058	+		PFLU_RS28955	0.24	-0.8
6,438,058	+		PFLU_RS28955	0.24	+2.5
6,438,059	-		PFLU_RS28955	0.24	-2.4
6,438,059	-		PFLU_RS28955	0.24	+1.4
6,438,076	+		PFLU_RS28955	0.32	+0.7
6,438,076	+		PFLU_RS28955	0.32	-0.6
6,438,076	+		PFLU_RS28955	0.32	+1.0
6,438,076	+		PFLU_RS28955	0.32	-2.2
6,438,076	+		PFLU_RS28955	0.32	+1.8
6,438,076	+		PFLU_RS28955	0.32	-1.9
6,438,076	+		PFLU_RS28955	0.32	-1.7
6,438,077	-		PFLU_RS28955	0.33	+0.4
6,438,077	-		PFLU_RS28955	0.33	+1.4
6,438,077	-		PFLU_RS28955	0.33	-1.9
6,438,077	-		PFLU_RS28955	0.33	-0.6
6,438,077	-		PFLU_RS28955	0.33	+0.4
6,438,077	-		PFLU_RS28955	0.33	-0.6
6,438,077	-		PFLU_RS28955	0.33	+0.4
6,438,077	-		PFLU_RS28955	0.33	-1.4
6,438,077	-		PFLU_RS28955	0.33	-3.4
6,438,096	+		PFLU_RS28955	0.42	+0.4
6,438,096	+		PFLU_RS28955	0.42	+0.4
6,438,096	+		PFLU_RS28955	0.42	+0.4
6,438,096	+		PFLU_RS28955	0.42	-2.3
6,438,096	+		PFLU_RS28955	0.42	-0.3
6,438,096	+		PFLU_RS28955	0.42	-1.4
6,438,096	+		PFLU_RS28955	0.42	-1.1
6,438,096	+		PFLU_RS28955	0.42	-1.1
6,438,096	+		PFLU_RS28955	0.42	+1.2
6,438,096	+		PFLU_RS28955	0.42	-0.6
6,438,096	+		PFLU_RS28955	0.42	+0.7
6,438,096	+		PFLU_RS28955	0.42	+0.2
6,438,096	+		PFLU_RS28955	0.42	-0.2
6,438,097	-		PFLU_RS28955	0.42	-1.9
6,438,097	-		PFLU_RS28955	0.42	+2.4
6,438,097	-		PFLU_RS28955	0.42	-1.4
6,438,097	-		PFLU_RS28955	0.42	-1.2
6,438,097	-		PFLU_RS28955	0.42	-0.6
6,438,097	-		PFLU_RS28955	0.42	-1.8
6,438,097	-		PFLU_RS28955	0.42	-3.4
6,438,097	-		PFLU_RS28955	0.42	-1.4
6,438,097	-		PFLU_RS28955	0.42	-2.3
6,438,099	+		PFLU_RS28955	0.43	+1.0
6,438,099	+		PFLU_RS28955	0.43	+1.2
6,438,099	+		PFLU_RS28955	0.43	+1.1
6,438,099	+		PFLU_RS28955	0.43	-2.9
6,438,099	+		PFLU_RS28955	0.43	+0.5
6,438,099	+		PFLU_RS28955	0.43	-1.2
6,438,099	+		PFLU_RS28955	0.43	+0.0
6,438,099	+		PFLU_RS28955	0.43	+0.1
6,438,099	+		PFLU_RS28955	0.43	+1.2
6,438,100	-		PFLU_RS28955	0.44	+0.5
6,438,100	-		PFLU_RS28955	0.44	-2.2
6,438,100	-		PFLU_RS28955	0.44	-1.4
6,438,100	-		PFLU_RS28955	0.44	-1.8
6,438,100	-		PFLU_RS28955	0.44	-1.1
6,438,100	-		PFLU_RS28955	0.44	-0.9
6,438,100	-		PFLU_RS28955	0.44	-0.2
6,438,100	-		PFLU_RS28955	0.44	-1.6
6,438,228	+				+0.8
6,438,228	+				+1.1
6,438,228	+				-0.9
6,438,229	-				-1.9
6,438,229	-				-0.2
6,438,259	+		PFLU_RS28960	0.14	-0.4
6,438,259	+		PFLU_RS28960	0.14	-1.5
6,438,259	+		PFLU_RS28960	0.14	-1.2
6,438,259	+		PFLU_RS28960	0.14	-1.2
6,438,260	-		PFLU_RS28960	0.14	-0.9
6,438,260	-		PFLU_RS28960	0.14	-4.0
6,438,260	-		PFLU_RS28960	0.14	-2.6
6,438,260	-		PFLU_RS28960	0.14	+0.8
6,438,313	+		PFLU_RS28960	0.31	-1.3
6,438,417	+		PFLU_RS28960	0.64	-0.4
6,438,417	+		PFLU_RS28960	0.64	-1.8
6,438,417	+		PFLU_RS28960	0.64	+0.2
6,438,417	+		PFLU_RS28960	0.64	-3.1
6,438,417	+		PFLU_RS28960	0.64	-0.9
6,438,417	+		PFLU_RS28960	0.64	-0.2
6,438,417	+		PFLU_RS28960	0.64	-0.9
6,438,418	-		PFLU_RS28960	0.64	-2.8
6,438,418	-		PFLU_RS28960	0.64	+0.4
6,438,418	-		PFLU_RS28960	0.64	-2.1
6,438,418	-		PFLU_RS28960	0.64	-1.0
6,438,418	-		PFLU_RS28960	0.64	+0.2
6,438,498	-		PFLU_RS28960	0.89	-1.6
6,438,551	+				-2.4
6,438,552	-				-1.9
6,438,552	-				-0.4
6,438,553	+				-1.8
6,438,553	+				-0.8
6,438,553	+				-0.6
6,438,553	+				-2.9
6,438,553	+				-1.5
6,438,553	+				-1.5
6,438,553	+				+2.4
6,438,553	+				-0.2
6,438,553	+				-0.3
6,438,553	+				-1.1
6,438,553	+				-2.1
6,438,553	+				+1.1
6,438,553	+				-1.2
6,438,553	+				-2.6
6,438,553	+				+0.8
6,438,553	+				-0.0
6,438,553	+				+0.8
6,438,553	+				-0.8
6,438,553	+				+0.0
6,438,553	+				+0.4
6,438,553	+				-0.4
6,438,553	+				-1.0
6,438,553	+				+0.3
6,438,553	+				-1.2
6,438,554	-				+0.4
6,438,554	-				-2.1
6,438,554	-				+0.8
6,438,554	-				+0.6
6,438,554	-				+0.0
6,438,554	-				+1.0
6,438,554	-				+0.7
6,438,554	-				+0.4
6,438,554	-				-2.9
6,438,554	-				-1.2
6,438,554	-				+0.4
6,438,554	-				+0.7
6,438,554	-				+0.7
6,438,554	-				-1.8
6,438,554	-				+0.9
6,438,613	-				-2.7
6,438,613	-				-2.6
6,438,666	+				-0.9
6,438,666	+				-0.1
6,438,666	+				-0.3
6,438,667	-				-0.9
6,438,673	+				-0.2
6,438,673	+				+0.8
6,438,673	+				-1.5
6,438,673	+				-0.4
6,438,673	+				-0.8
6,438,673	+				-0.2
6,438,674	-				+1.4
6,438,674	-				+0.4
6,438,674	-				-0.6
6,438,674	-				-1.0
6,438,711	+				+1.7
6,438,711	+				+1.4
6,438,711	+				+0.4
6,438,712	-				-2.6
6,438,712	-				-1.1
6,438,783	+				-2.2
6,438,783	+				+0.5
6,438,784	-				+1.5
6,438,784	-				-0.7
6,438,784	-				-0.2
6,438,784	-				-1.2
6,438,784	-				-1.4
6,438,784	-				-0.4
6,438,784	-				-0.5
6,438,784	-				-0.6
6,438,946	+		PFLU_RS28965	0.24	+1.9
6,438,946	+		PFLU_RS28965	0.24	-1.3
6,438,946	+		PFLU_RS28965	0.24	-2.7
6,438,946	+		PFLU_RS28965	0.24	+0.1
6,438,946	+		PFLU_RS28965	0.24	-3.2
6,438,946	+		PFLU_RS28965	0.24	-0.5
6,438,946	+		PFLU_RS28965	0.24	+0.1
6,438,946	+		PFLU_RS28965	0.24	-0.1
6,438,946	+		PFLU_RS28965	0.24	-0.8
6,438,946	+		PFLU_RS28965	0.24	+0.9
6,438,946	+		PFLU_RS28965	0.24	+1.9
6,438,946	+		PFLU_RS28965	0.24	-1.2
6,438,946	+		PFLU_RS28965	0.24	+1.0
6,438,946	+		PFLU_RS28965	0.24	+0.2
6,438,946	+		PFLU_RS28965	0.24	+1.0
6,438,946	+		PFLU_RS28965	0.24	+2.4
6,438,947	-		PFLU_RS28965	0.24	-0.5
6,438,947	-		PFLU_RS28965	0.24	+1.9
6,438,947	-		PFLU_RS28965	0.24	-2.8
6,438,947	-		PFLU_RS28965	0.24	+0.1
6,438,947	-		PFLU_RS28965	0.24	-0.4
6,438,947	-		PFLU_RS28965	0.24	-0.1
6,438,947	-		PFLU_RS28965	0.24	+0.6
6,438,947	-		PFLU_RS28965	0.24	-0.1
6,438,947	-		PFLU_RS28965	0.24	-2.4
6,438,947	-		PFLU_RS28965	0.24	-1.8
6,438,947	-		PFLU_RS28965	0.24	-0.4
6,438,947	-		PFLU_RS28965	0.24	+0.7
6,438,947	-		PFLU_RS28965	0.24	+0.9
6,438,956	+		PFLU_RS28965	0.25	-0.4
6,438,956	+		PFLU_RS28965	0.25	+0.8
6,438,956	+		PFLU_RS28965	0.25	+1.7
6,438,956	+		PFLU_RS28965	0.25	+0.4
6,438,957	-		PFLU_RS28965	0.25	-0.1
6,438,957	-		PFLU_RS28965	0.25	-0.5
6,438,960	+		PFLU_RS28965	0.26	-1.8
6,439,028	+		PFLU_RS28965	0.37	-1.8
6,439,028	+		PFLU_RS28965	0.37	+1.7
6,439,028	+		PFLU_RS28965	0.37	-4.1
6,439,028	+		PFLU_RS28965	0.37	+0.6
6,439,028	+		PFLU_RS28965	0.37	+0.5
6,439,028	+		PFLU_RS28965	0.37	+0.5
6,439,028	+		PFLU_RS28965	0.37	-0.6
6,439,028	+		PFLU_RS28965	0.37	+0.3
6,439,028	+		PFLU_RS28965	0.37	-1.0
6,439,028	+		PFLU_RS28965	0.37	-1.4
6,439,028	+		PFLU_RS28965	0.37	-2.4
6,439,028	+		PFLU_RS28965	0.37	-0.5
6,439,028	+		PFLU_RS28965	0.37	+0.2
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6,439,029	-		PFLU_RS28965	0.37	-3.2
6,439,029	-		PFLU_RS28965	0.37	-2.5
6,439,138	+		PFLU_RS28965	0.54	-1.9
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6,439,139	-		PFLU_RS28965	0.54	+2.0
6,439,256	+		PFLU_RS28965	0.73	-0.0
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6,439,256	+		PFLU_RS28965	0.73	+1.3
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6,439,257	-		PFLU_RS28965	0.73	+0.6
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