Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18515

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18510 and PFLU_RS18515 are separated by 16 nucleotidesPFLU_RS18515 and PFLU_RS18520 overlap by 1 nucleotides PFLU_RS18510: PFLU_RS18510 - serine--tRNA ligase, at 4,188,992 to 4,190,272 _RS18510 PFLU_RS18515: PFLU_RS18515 - fluoride efflux transporter CrcB, at 4,190,289 to 4,190,663 _RS18515 PFLU_RS18520: PFLU_RS18520 - replication-associated recombination protein A, at 4,190,663 to 4,191,985 _RS18520 Position (kb) 4190 4191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4190.357 kb on - strand, within PFLU_RS18515at 4190.507 kb on - strand, within PFLU_RS18515at 4190.614 kb on - strand, within PFLU_RS18515at 4190.614 kb on - strand, within PFLU_RS18515at 4190.619 kb on - strand, within PFLU_RS18515at 4190.657 kb on + strandat 4190.657 kb on + strandat 4190.657 kb on + strandat 4190.657 kb on + strandat 4190.658 kb on - strandat 4190.658 kb on - strandat 4190.658 kb on - strandat 4190.658 kb on - strandat 4190.664 kb on + strandat 4190.664 kb on + strandat 4190.665 kb on - strandat 4190.665 kb on - strandat 4190.665 kb on - strandat 4190.665 kb on - strandat 4190.760 kb on + strandat 4190.761 kb on - strandat 4190.761 kb on - strandat 4190.761 kb on - strandat 4190.761 kb on - strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.793 kb on + strandat 4190.794 kb on - strandat 4190.794 kb on - strandat 4190.794 kb on - strandat 4190.794 kb on - strandat 4190.794 kb on - strandat 4190.794 kb on - strandat 4190.794 kb on - strandat 4190.812 kb on - strand, within PFLU_RS18520at 4190.835 kb on + strand, within PFLU_RS18520at 4190.841 kb on + strand, within PFLU_RS18520at 4190.841 kb on + strand, within PFLU_RS18520at 4190.841 kb on + strand, within PFLU_RS18520at 4190.842 kb on - strand, within PFLU_RS18520at 4190.842 kb on - strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.958 kb on + strand, within PFLU_RS18520at 4190.959 kb on - strand, within PFLU_RS18520at 4190.959 kb on - strand, within PFLU_RS18520at 4190.991 kb on + strand, within PFLU_RS18520at 4190.991 kb on + strand, within PFLU_RS18520at 4190.991 kb on + strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4190.992 kb on - strand, within PFLU_RS18520at 4191.139 kb on - strand, within PFLU_RS18520at 4191.180 kb on + strand, within PFLU_RS18520at 4191.181 kb on - strand, within PFLU_RS18520at 4191.181 kb on - strand, within PFLU_RS18520at 4191.181 kb on - strand, within PFLU_RS18520at 4191.181 kb on - strand, within PFLU_RS18520at 4191.181 kb on - strand, within PFLU_RS18520at 4191.199 kb on + strand, within PFLU_RS18520at 4191.240 kb on + strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.241 kb on - strand, within PFLU_RS18520at 4191.509 kb on + strand, within PFLU_RS18520at 4191.509 kb on + strand, within PFLU_RS18520at 4191.510 kb on - strand, within PFLU_RS18520at 4191.510 kb on - strand, within PFLU_RS18520at 4191.510 kb on - strand, within PFLU_RS18520at 4191.510 kb on - strand, within PFLU_RS18520at 4191.513 kb on + strand, within PFLU_RS18520at 4191.513 kb on + strand, within PFLU_RS18520at 4191.513 kb on + strand, within PFLU_RS18520at 4191.513 kb on + strand, within PFLU_RS18520at 4191.513 kb on + strand, within PFLU_RS18520at 4191.514 kb on - strand, within PFLU_RS18520at 4191.514 kb on - strand, within PFLU_RS18520at 4191.514 kb on - strand, within PFLU_RS18520at 4191.514 kb on - strand, within PFLU_RS18520at 4191.514 kb on - strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.606 kb on + strand, within PFLU_RS18520at 4191.607 kb on - strand, within PFLU_RS18520at 4191.607 kb on - strand, within PFLU_RS18520at 4191.607 kb on - strand, within PFLU_RS18520at 4191.607 kb on - strand, within PFLU_RS18520

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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4,190,357 - PFLU_RS18515 0.18 -2.8
4,190,507 - PFLU_RS18515 0.58 -0.0
4,190,614 - PFLU_RS18515 0.87 -0.6
4,190,614 - PFLU_RS18515 0.87 -0.8
4,190,619 - PFLU_RS18515 0.88 -2.1
4,190,657 + -0.4
4,190,657 + -0.3
4,190,657 + +1.3
4,190,657 + +1.0
4,190,658 - -0.6
4,190,658 - +0.7
4,190,658 - +0.6
4,190,658 - +1.3
4,190,664 + +0.6
4,190,664 + -2.4
4,190,665 - -0.4
4,190,665 - -0.5
4,190,665 - -0.5
4,190,665 - -1.3
4,190,760 + +2.0
4,190,761 - -0.3
4,190,761 - +1.0
4,190,761 - +0.7
4,190,761 - -0.1
4,190,793 + +0.3
4,190,793 + +0.7
4,190,793 + -1.1
4,190,793 + +0.5
4,190,793 + +0.9
4,190,793 + +0.3
4,190,793 + +0.6
4,190,793 + -0.3
4,190,793 + +2.1
4,190,793 + -0.5
4,190,794 - +1.2
4,190,794 - -0.0
4,190,794 - -2.9
4,190,794 - +1.7
4,190,794 - +0.4
4,190,794 - +0.6
4,190,794 - -4.1
4,190,812 - PFLU_RS18520 0.11 -2.1
4,190,835 + PFLU_RS18520 0.13 +1.0
4,190,841 + PFLU_RS18520 0.13 -1.0
4,190,841 + PFLU_RS18520 0.13 -2.1
4,190,841 + PFLU_RS18520 0.13 -0.8
4,190,842 - PFLU_RS18520 0.14 +0.2
4,190,842 - PFLU_RS18520 0.14 -2.0
4,190,958 + PFLU_RS18520 0.22 +1.7
4,190,958 + PFLU_RS18520 0.22 +0.1
4,190,958 + PFLU_RS18520 0.22 +0.0
4,190,958 + PFLU_RS18520 0.22 -1.3
4,190,958 + PFLU_RS18520 0.22 +0.2
4,190,958 + PFLU_RS18520 0.22 -0.6
4,190,958 + PFLU_RS18520 0.22 +0.3
4,190,959 - PFLU_RS18520 0.22 -0.8
4,190,959 - PFLU_RS18520 0.22 +0.9
4,190,991 + PFLU_RS18520 0.25 +0.1
4,190,991 + PFLU_RS18520 0.25 -0.7
4,190,991 + PFLU_RS18520 0.25 +1.7
4,190,992 - PFLU_RS18520 0.25 +0.1
4,190,992 - PFLU_RS18520 0.25 -0.6
4,190,992 - PFLU_RS18520 0.25 +0.7
4,190,992 - PFLU_RS18520 0.25 +1.2
4,190,992 - PFLU_RS18520 0.25 -2.6
4,190,992 - PFLU_RS18520 0.25 +0.0
4,190,992 - PFLU_RS18520 0.25 +1.6
4,190,992 - PFLU_RS18520 0.25 +0.3
4,191,139 - PFLU_RS18520 0.36 +0.2
4,191,180 + PFLU_RS18520 0.39 +3.1
4,191,181 - PFLU_RS18520 0.39 -0.6
4,191,181 - PFLU_RS18520 0.39 +0.8
4,191,181 - PFLU_RS18520 0.39 -2.7
4,191,181 - PFLU_RS18520 0.39 +0.4
4,191,181 - PFLU_RS18520 0.39 -0.8
4,191,199 + PFLU_RS18520 0.41 +2.4
4,191,240 + PFLU_RS18520 0.44 -1.4
4,191,241 - PFLU_RS18520 0.44 -1.0
4,191,241 - PFLU_RS18520 0.44 -2.9
4,191,241 - PFLU_RS18520 0.44 +0.0
4,191,241 - PFLU_RS18520 0.44 -1.9
4,191,241 - PFLU_RS18520 0.44 +0.3
4,191,241 - PFLU_RS18520 0.44 -1.4
4,191,241 - PFLU_RS18520 0.44 +0.6
4,191,241 - PFLU_RS18520 0.44 +1.6
4,191,509 + PFLU_RS18520 0.64 -1.0
4,191,509 + PFLU_RS18520 0.64 +0.3
4,191,510 - PFLU_RS18520 0.64 -2.4
4,191,510 - PFLU_RS18520 0.64 -0.8
4,191,510 - PFLU_RS18520 0.64 -0.7
4,191,510 - PFLU_RS18520 0.64 +1.0
4,191,513 + PFLU_RS18520 0.64 -1.7
4,191,513 + PFLU_RS18520 0.64 +0.3
4,191,513 + PFLU_RS18520 0.64 -1.6
4,191,513 + PFLU_RS18520 0.64 +0.7
4,191,513 + PFLU_RS18520 0.64 -0.8
4,191,514 - PFLU_RS18520 0.64 +0.1
4,191,514 - PFLU_RS18520 0.64 -1.4
4,191,514 - PFLU_RS18520 0.64 +0.6
4,191,514 - PFLU_RS18520 0.64 -0.1
4,191,514 - PFLU_RS18520 0.64 +0.0
4,191,606 + PFLU_RS18520 0.71 -0.4
4,191,606 + PFLU_RS18520 0.71 -0.3
4,191,606 + PFLU_RS18520 0.71 +0.9
4,191,606 + PFLU_RS18520 0.71 -0.4
4,191,606 + PFLU_RS18520 0.71 +1.4
4,191,606 + PFLU_RS18520 0.71 -1.3
4,191,606 + PFLU_RS18520 0.71 +4.1
4,191,606 + PFLU_RS18520 0.71 -1.7
4,191,606 + PFLU_RS18520 0.71 -0.6
4,191,606 + PFLU_RS18520 0.71 -0.3
4,191,606 + PFLU_RS18520 0.71 -0.2
4,191,607 - PFLU_RS18520 0.71 -0.8
4,191,607 - PFLU_RS18520 0.71 +1.6
4,191,607 - PFLU_RS18520 0.71 -1.5
4,191,607 - PFLU_RS18520 0.71 -0.4

Or see this region's nucleotide sequence