Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06228

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06227 and H281DRAFT_06228 are separated by 302 nucleotidesH281DRAFT_06228 and H281DRAFT_06229 are separated by 430 nucleotidesH281DRAFT_06229 and H281DRAFT_06230 are separated by 27 nucleotides H281DRAFT_06227: H281DRAFT_06227 - Outer membrane protein (porin), at 5,931 to 7,106 _06227 H281DRAFT_06228: H281DRAFT_06228 - ubiquinone biosynthesis monooxygenase Coq7, at 7,409 to 8,047 _06228 H281DRAFT_06229: H281DRAFT_06229 - MraZ protein, at 8,478 to 8,906 _06229 H281DRAFT_06230: H281DRAFT_06230 - 16S rRNA (cytosine1402-N4)-methyltransferase, at 8,934 to 9,875 _06230 Position (kb) 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6.438 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.500 kb on - strand, within H281DRAFT_06227at 6.533 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.595 kb on + strand, within H281DRAFT_06227at 6.596 kb on - strand, within H281DRAFT_06227at 6.596 kb on - strand, within H281DRAFT_06227at 6.622 kb on + strand, within H281DRAFT_06227at 6.623 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.656 kb on + strand, within H281DRAFT_06227at 6.662 kb on - strand, within H281DRAFT_06227at 6.706 kb on + strand, within H281DRAFT_06227at 6.707 kb on - strand, within H281DRAFT_06227at 6.745 kb on + strand, within H281DRAFT_06227at 6.746 kb on - strand, within H281DRAFT_06227at 6.763 kb on + strand, within H281DRAFT_06227at 6.763 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.951 kb on - strand, within H281DRAFT_06227at 6.951 kb on - strand, within H281DRAFT_06227at 6.951 kb on - strand, within H281DRAFT_06227at 6.970 kb on + strand, within H281DRAFT_06227at 6.970 kb on + strand, within H281DRAFT_06227at 6.971 kb on - strand, within H281DRAFT_06227at 6.971 kb on - strand, within H281DRAFT_06227at 7.022 kb on + strandat 7.096 kb on + strandat 7.126 kb on - strandat 7.139 kb on - strandat 7.149 kb on + strandat 7.150 kb on - strandat 7.150 kb on - strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.154 kb on - strandat 7.154 kb on - strandat 7.154 kb on - strandat 7.154 kb on - strandat 7.157 kb on + strandat 7.158 kb on - strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.206 kb on + strandat 7.219 kb on - strandat 7.219 kb on - strandat 7.282 kb on - strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.090 kb on + strandat 8.095 kb on + strandat 8.095 kb on + strandat 8.095 kb on + strandat 8.096 kb on - strandat 8.096 kb on - strandat 8.096 kb on - strandat 8.212 kb on + strandat 8.212 kb on + strandat 8.212 kb on + strandat 8.212 kb on + strandat 8.233 kb on + strandat 8.246 kb on + strandat 8.389 kb on + strandat 8.475 kb on + strandat 8.475 kb on + strandat 8.475 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.915 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.919 kb on + strandat 8.920 kb on + strandat 8.921 kb on + strandat 8.921 kb on + strandat 8.921 kb on + strandat 8.921 kb on + strandat 8.921 kb on + strandat 8.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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6,438 - H281DRAFT_06227 0.43 +0.5
6,486 - H281DRAFT_06227 0.47 +0.8
6,486 - H281DRAFT_06227 0.47 -0.2
6,486 - H281DRAFT_06227 0.47 +0.0
6,500 - H281DRAFT_06227 0.48 +0.1
6,533 - H281DRAFT_06227 0.51 +1.5
6,567 - H281DRAFT_06227 0.54 +1.4
6,567 - H281DRAFT_06227 0.54 -0.5
6,567 - H281DRAFT_06227 0.54 +0.3
6,567 - H281DRAFT_06227 0.54 +0.2
6,567 - H281DRAFT_06227 0.54 +0.1
6,567 - H281DRAFT_06227 0.54 +0.2
6,595 + H281DRAFT_06227 0.56 +1.0
6,596 - H281DRAFT_06227 0.57 +0.3
6,596 - H281DRAFT_06227 0.57 -0.1
6,622 + H281DRAFT_06227 0.59 -0.2
6,623 - H281DRAFT_06227 0.59 -0.0
6,638 - H281DRAFT_06227 0.60 -0.0
6,638 - H281DRAFT_06227 0.60 +0.3
6,638 - H281DRAFT_06227 0.60 +0.2
6,638 - H281DRAFT_06227 0.60 +0.3
6,638 - H281DRAFT_06227 0.60 +0.4
6,656 + H281DRAFT_06227 0.62 -1.1
6,662 - H281DRAFT_06227 0.62 -0.4
6,706 + H281DRAFT_06227 0.66 -0.8
6,707 - H281DRAFT_06227 0.66 +1.0
6,745 + H281DRAFT_06227 0.69 +0.4
6,746 - H281DRAFT_06227 0.69 +0.5
6,763 + H281DRAFT_06227 0.71 +0.5
6,763 + H281DRAFT_06227 0.71 -0.0
6,811 + H281DRAFT_06227 0.75 -0.2
6,811 + H281DRAFT_06227 0.75 +0.4
6,811 + H281DRAFT_06227 0.75 -0.1
6,811 + H281DRAFT_06227 0.75 +0.3
6,812 - H281DRAFT_06227 0.75 +0.5
6,812 - H281DRAFT_06227 0.75 +0.1
6,812 - H281DRAFT_06227 0.75 -0.1
6,812 - H281DRAFT_06227 0.75 +0.0
6,812 - H281DRAFT_06227 0.75 +0.3
6,812 - H281DRAFT_06227 0.75 +0.0
6,812 - H281DRAFT_06227 0.75 +0.1
6,951 - H281DRAFT_06227 0.87 +0.2
6,951 - H281DRAFT_06227 0.87 +0.1
6,951 - H281DRAFT_06227 0.87 +0.2
6,970 + H281DRAFT_06227 0.88 +0.0
6,970 + H281DRAFT_06227 0.88 +0.1
6,971 - H281DRAFT_06227 0.88 +0.7
6,971 - H281DRAFT_06227 0.88 -0.1
7,022 + -0.0
7,096 + -0.5
7,126 - +0.2
7,139 - +0.3
7,149 + -0.5
7,150 - +0.5
7,150 - +0.0
7,153 + +0.8
7,153 + -0.5
7,153 + +0.4
7,153 + +0.7
7,153 + +0.7
7,153 + +0.6
7,154 - -0.5
7,154 - +0.5
7,154 - -0.6
7,154 - +0.4
7,157 + -0.4
7,158 - +1.1
7,201 + +0.8
7,201 + +2.3
7,201 + +0.5
7,202 - -0.4
7,202 - +0.3
7,202 - +0.4
7,206 + +0.4
7,219 - +0.4
7,219 - +0.3
7,282 - +0.4
8,045 + +0.3
8,045 + -0.5
8,045 + -0.3
8,045 + +0.4
8,045 + +0.3
8,045 + +0.4
8,045 + +0.6
8,045 + -0.2
8,045 + +1.0
8,045 + +0.3
8,045 + +0.1
8,046 - +0.2
8,046 - +0.3
8,046 - -1.8
8,046 - +0.3
8,046 - +0.6
8,046 - +0.5
8,046 - -1.6
8,090 + +0.2
8,095 + -0.6
8,095 + +0.5
8,095 + -0.0
8,096 - -0.4
8,096 - +0.7
8,096 - -1.8
8,212 + -2.8
8,212 + -2.2
8,212 + -0.8
8,212 + -2.6
8,233 + +0.3
8,246 + -3.4
8,389 + -0.8
8,475 + +0.3
8,475 + +0.6
8,475 + -0.3
8,915 + -3.5
8,915 + -3.0
8,915 + -3.7
8,915 + -2.7
8,915 + -3.4
8,915 + -3.2
8,915 + -3.0
8,915 + -2.5
8,915 + -2.7
8,915 + -2.7
8,919 + -3.1
8,919 + -4.2
8,919 + -1.8
8,919 + -3.0
8,919 + -1.3
8,919 + -2.7
8,919 + -2.5
8,919 + -2.4
8,919 + -2.5
8,919 + -2.7
8,919 + -2.1
8,919 + -1.8
8,919 + -3.6
8,919 + -3.4
8,919 + -2.1
8,920 + -3.2
8,921 + -1.5
8,921 + -1.2
8,921 + -1.6
8,921 + -0.5
8,921 + -3.2
8,921 + -3.0

Or see this region's nucleotide sequence