Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05865

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05864 and H281DRAFT_05865 are separated by 114 nucleotidesH281DRAFT_05865 and H281DRAFT_05866 are separated by 132 nucleotides H281DRAFT_05864: H281DRAFT_05864 - Pimeloyl-ACP methyl ester carboxylesterase, at 1,633 to 2,427 _05864 H281DRAFT_05865: H281DRAFT_05865 - transcriptional regulator, LysR family, at 2,542 to 3,450 _05865 H281DRAFT_05866: H281DRAFT_05866 - AraC family transcriptional regulator, activator of mtrCDE, at 3,583 to 4,644 _05866 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1at 1.651 kb on + strandat 1.652 kb on - strandat 1.860 kb on + strand, within H281DRAFT_05864at 2.095 kb on + strand, within H281DRAFT_05864at 2.182 kb on + strand, within H281DRAFT_05864at 2.194 kb on + strandat 2.195 kb on - strand, within H281DRAFT_05864at 2.291 kb on + strand, within H281DRAFT_05864at 2.292 kb on - strandat 2.349 kb on - strandat 2.454 kb on - strandat 2.455 kb on + strandat 2.734 kb on + strand, within H281DRAFT_05865at 2.734 kb on + strand, within H281DRAFT_05865at 2.737 kb on + strand, within H281DRAFT_05865at 2.737 kb on + strand, within H281DRAFT_05865at 2.738 kb on - strand, within H281DRAFT_05865at 2.749 kb on - strand, within H281DRAFT_05865at 2.749 kb on - strand, within H281DRAFT_05865at 2.916 kb on - strand, within H281DRAFT_05865at 2.933 kb on - strand, within H281DRAFT_05865at 3.323 kb on - strand, within H281DRAFT_05865at 3.355 kb on + strand, within H281DRAFT_05865at 3.457 kb on + strandat 3.458 kb on - strandat 3.515 kb on - strandat 3.523 kb on - strandat 3.523 kb on - strandat 3.526 kb on - strandat 3.526 kb on - strandat 3.548 kb on + strandat 3.549 kb on - strandat 3.549 kb on - strandat 3.549 kb on - strandat 3.841 kb on + strand, within H281DRAFT_05866at 3.842 kb on - strand, within H281DRAFT_05866at 3.842 kb on - strand, within H281DRAFT_05866at 3.842 kb on - strand, within H281DRAFT_05866at 3.866 kb on + strand, within H281DRAFT_05866at 3.866 kb on + strand, within H281DRAFT_05866at 3.866 kb on + strand, within H281DRAFT_05866

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,651 + +0.3
1,652 - +0.2
1,860 + H281DRAFT_05864 0.29 +0.3
2,095 + H281DRAFT_05864 0.58 +0.0
2,182 + H281DRAFT_05864 0.69 +0.4
2,194 + +0.7
2,195 - H281DRAFT_05864 0.71 +0.1
2,291 + H281DRAFT_05864 0.83 +0.2
2,292 - +1.0
2,349 - +0.2
2,454 - -0.0
2,455 + -0.1
2,734 + H281DRAFT_05865 0.21 +0.5
2,734 + H281DRAFT_05865 0.21 +0.6
2,737 + H281DRAFT_05865 0.21 -0.2
2,737 + H281DRAFT_05865 0.21 -0.2
2,738 - H281DRAFT_05865 0.22 +0.7
2,749 - H281DRAFT_05865 0.23 +0.4
2,749 - H281DRAFT_05865 0.23 +0.1
2,916 - H281DRAFT_05865 0.41 +0.4
2,933 - H281DRAFT_05865 0.43 +0.8
3,323 - H281DRAFT_05865 0.86 +0.7
3,355 + H281DRAFT_05865 0.89 +0.1
3,457 + +0.5
3,458 - -0.3
3,515 - -1.4
3,523 - +0.1
3,523 - -0.3
3,526 - -0.3
3,526 - +0.2
3,548 + +0.1
3,549 - +0.2
3,549 - -0.0
3,549 - +0.1
3,841 + H281DRAFT_05866 0.24 -0.3
3,842 - H281DRAFT_05866 0.24 -0.2
3,842 - H281DRAFT_05866 0.24 -0.1
3,842 - H281DRAFT_05866 0.24 +0.8
3,866 + H281DRAFT_05866 0.27 -0.8
3,866 + H281DRAFT_05866 0.27 +0.3
3,866 + H281DRAFT_05866 0.27 -0.1

Or see this region's nucleotide sequence