Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05678

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05677 and H281DRAFT_05678 are separated by 117 nucleotidesH281DRAFT_05678 and H281DRAFT_05679 are separated by 384 nucleotides H281DRAFT_05677: H281DRAFT_05677 - Protein of unknown function (DUF1059), at 94,356 to 94,565 _05677 H281DRAFT_05678: H281DRAFT_05678 - hypothetical protein, at 94,683 to 95,003 _05678 H281DRAFT_05679: H281DRAFT_05679 - SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase, at 95,388 to 96,230 _05679 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1 2at 94.114 kb on + strandat 94.114 kb on + strandat 94.115 kb on - strandat 94.244 kb on - strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.332 kb on + strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.333 kb on - strandat 94.336 kb on + strandat 94.337 kb on - strandat 94.368 kb on + strandat 94.369 kb on - strandat 94.369 kb on - strandat 94.658 kb on + strandat 94.658 kb on + strandat 94.659 kb on - strandat 94.659 kb on - strandat 94.684 kb on + strandat 94.685 kb on - strandat 94.685 kb on - strandat 94.685 kb on - strandat 94.685 kb on - strandat 94.685 kb on - strandat 94.704 kb on + strandat 94.804 kb on + strand, within H281DRAFT_05678at 94.998 kb on - strandat 95.016 kb on + strandat 95.016 kb on + strandat 95.017 kb on - strandat 95.017 kb on - strandat 95.017 kb on - strandat 95.017 kb on - strandat 95.017 kb on - strandat 95.019 kb on + strandat 95.067 kb on - strandat 95.108 kb on + strandat 95.108 kb on + strandat 95.108 kb on + strandat 95.108 kb on + strandat 95.108 kb on + strandat 95.109 kb on - strandat 95.109 kb on - strandat 95.109 kb on - strandat 95.109 kb on - strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.143 kb on - strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.149 kb on - strandat 95.150 kb on + strandat 95.150 kb on + strandat 95.150 kb on + strandat 95.150 kb on + strandat 95.150 kb on + strandat 95.151 kb on - strandat 95.164 kb on + strandat 95.164 kb on + strandat 95.165 kb on - strandat 95.165 kb on - strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.212 kb on - strandat 95.212 kb on - strandat 95.212 kb on - strandat 95.212 kb on - strandat 95.212 kb on - strandat 95.212 kb on - strandat 95.508 kb on + strand, within H281DRAFT_05679at 95.508 kb on + strand, within H281DRAFT_05679at 95.509 kb on - strand, within H281DRAFT_05679at 95.509 kb on - strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strandat 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.605 kb on + strand, within H281DRAFT_05679at 95.606 kb on - strand, within H281DRAFT_05679at 95.606 kb on - strand, within H281DRAFT_05679at 95.606 kb on - strand, within H281DRAFT_05679at 95.612 kb on + strand, within H281DRAFT_05679at 95.613 kb on - strand, within H281DRAFT_05679at 95.613 kb on - strand, within H281DRAFT_05679at 95.619 kb on + strand, within H281DRAFT_05679at 95.619 kb on + strand, within H281DRAFT_05679at 95.619 kb on + strand, within H281DRAFT_05679at 95.620 kb on - strand, within H281DRAFT_05679at 95.620 kb on - strand, within H281DRAFT_05679at 95.620 kb on - strand, within H281DRAFT_05679at 95.673 kb on + strand, within H281DRAFT_05679at 95.674 kb on - strand, within H281DRAFT_05679at 95.674 kb on - strand, within H281DRAFT_05679at 95.744 kb on + strandat 95.744 kb on + strand, within H281DRAFT_05679at 95.744 kb on + strand, within H281DRAFT_05679at 95.745 kb on - strandat 95.778 kb on - strand, within H281DRAFT_05679at 95.780 kb on + strand, within H281DRAFT_05679at 95.780 kb on + strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.837 kb on + strand, within H281DRAFT_05679at 95.886 kb on + strand, within H281DRAFT_05679at 95.887 kb on - strand, within H281DRAFT_05679at 95.887 kb on - strand, within H281DRAFT_05679at 95.888 kb on + strand, within H281DRAFT_05679at 95.948 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.996 kb on + strand, within H281DRAFT_05679at 95.997 kb on - strand, within H281DRAFT_05679at 95.997 kb on - strand, within H281DRAFT_05679

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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94,114 + +0.4
94,114 + -0.0
94,115 - +0.6
94,244 - +0.1
94,332 + +0.3
94,332 + -0.3
94,332 + +0.2
94,332 + +0.4
94,332 + -0.2
94,332 + -0.6
94,332 + +0.5
94,332 + -0.1
94,332 + -0.3
94,332 + +1.1
94,333 - -0.2
94,333 - -0.0
94,333 - +0.2
94,333 - -0.1
94,333 - +0.4
94,333 - +0.4
94,333 - +0.5
94,333 - +0.2
94,333 - -0.1
94,336 + +0.1
94,337 - +2.5
94,368 + -0.5
94,369 - +0.4
94,369 - +0.3
94,658 + +0.3
94,658 + +0.4
94,659 - +0.1
94,659 - +0.1
94,684 + -0.4
94,685 - +0.2
94,685 - +0.1
94,685 - +1.4
94,685 - +1.0
94,685 - +0.4
94,704 + +0.8
94,804 + H281DRAFT_05678 0.38 +0.6
94,998 - -0.1
95,016 + -0.0
95,016 + +0.9
95,017 - +0.0
95,017 - +0.3
95,017 - -0.1
95,017 - -0.7
95,017 - +0.1
95,019 + +0.4
95,067 - -0.0
95,108 + -0.3
95,108 + -0.2
95,108 + +0.2
95,108 + +2.3
95,108 + -0.6
95,109 - +0.4
95,109 - +0.2
95,109 - -0.1
95,109 - -0.3
95,142 + +0.3
95,142 + -0.4
95,142 + +0.2
95,142 + +0.3
95,142 + +0.1
95,142 + +0.1
95,143 - +0.4
95,148 + -0.2
95,148 + -0.1
95,148 + -0.2
95,149 - +0.6
95,150 + +0.3
95,150 + -0.1
95,150 + +0.1
95,150 + -0.0
95,150 + +0.3
95,151 - -0.1
95,164 + -1.3
95,164 + +0.2
95,165 - -0.4
95,165 - -0.3
95,211 + +0.4
95,211 + +0.3
95,211 + -0.0
95,211 + +0.5
95,211 + +0.0
95,211 + +0.2
95,212 - +0.8
95,212 - +0.8
95,212 - -0.1
95,212 - -0.1
95,212 - -0.1
95,212 - +0.2
95,508 + H281DRAFT_05679 0.14 -0.5
95,508 + H281DRAFT_05679 0.14 +0.3
95,509 - H281DRAFT_05679 0.14 +0.8
95,509 - H281DRAFT_05679 0.14 -0.3
95,601 + H281DRAFT_05679 0.25 -0.3
95,601 + +0.3
95,601 + H281DRAFT_05679 0.25 +0.4
95,601 + H281DRAFT_05679 0.25 +0.1
95,601 + H281DRAFT_05679 0.25 +0.1
95,601 + H281DRAFT_05679 0.25 -0.2
95,602 - H281DRAFT_05679 0.25 +0.1
95,602 - H281DRAFT_05679 0.25 +1.0
95,602 - H281DRAFT_05679 0.25 -0.7
95,602 - H281DRAFT_05679 0.25 +0.4
95,605 + H281DRAFT_05679 0.26 +0.0
95,606 - H281DRAFT_05679 0.26 +0.2
95,606 - H281DRAFT_05679 0.26 +0.1
95,606 - H281DRAFT_05679 0.26 +0.1
95,612 + H281DRAFT_05679 0.27 +1.8
95,613 - H281DRAFT_05679 0.27 +0.3
95,613 - H281DRAFT_05679 0.27 +0.3
95,619 + H281DRAFT_05679 0.27 +0.4
95,619 + H281DRAFT_05679 0.27 -0.1
95,619 + H281DRAFT_05679 0.27 -0.0
95,620 - H281DRAFT_05679 0.28 +0.4
95,620 - H281DRAFT_05679 0.28 +1.1
95,620 - H281DRAFT_05679 0.28 -0.6
95,673 + H281DRAFT_05679 0.34 -0.2
95,674 - H281DRAFT_05679 0.34 +0.8
95,674 - H281DRAFT_05679 0.34 -0.0
95,744 + -0.6
95,744 + H281DRAFT_05679 0.42 +0.7
95,744 + H281DRAFT_05679 0.42 -0.1
95,745 - +1.3
95,778 - H281DRAFT_05679 0.46 -0.1
95,780 + H281DRAFT_05679 0.47 -0.1
95,780 + H281DRAFT_05679 0.47 +0.0
95,781 - H281DRAFT_05679 0.47 +0.4
95,781 - H281DRAFT_05679 0.47 +0.5
95,781 - H281DRAFT_05679 0.47 +0.0
95,781 - H281DRAFT_05679 0.47 -0.1
95,781 - H281DRAFT_05679 0.47 -0.2
95,837 + H281DRAFT_05679 0.53 +0.1
95,886 + H281DRAFT_05679 0.59 -0.0
95,887 - H281DRAFT_05679 0.59 +0.0
95,887 - H281DRAFT_05679 0.59 -0.6
95,888 + H281DRAFT_05679 0.59 -0.2
95,948 + H281DRAFT_05679 0.66 -0.2
95,992 + H281DRAFT_05679 0.72 +0.3
95,992 + H281DRAFT_05679 0.72 +0.7
95,992 + H281DRAFT_05679 0.72 -0.7
95,992 + H281DRAFT_05679 0.72 -0.6
95,993 - H281DRAFT_05679 0.72 +0.8
95,993 - H281DRAFT_05679 0.72 +0.5
95,993 - H281DRAFT_05679 0.72 -0.3
95,993 - H281DRAFT_05679 0.72 -0.1
95,996 + H281DRAFT_05679 0.72 +0.5
95,997 - H281DRAFT_05679 0.72 +0.1
95,997 - H281DRAFT_05679 0.72 +0.6

Or see this region's nucleotide sequence