Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05381

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05380 and H281DRAFT_05381 are separated by 10 nucleotidesH281DRAFT_05381 and H281DRAFT_05382 are separated by 121 nucleotides H281DRAFT_05380: H281DRAFT_05380 - transcriptional regulator, AraC family, at 138,826 to 140,028 _05380 H281DRAFT_05381: H281DRAFT_05381 - phosphonoacetate hydrolase, at 140,039 to 140,347 _05381 H281DRAFT_05382: H281DRAFT_05382 - diguanylate cyclase (GGDEF) domain-containing protein, at 140,469 to 141,947 _05382 Position (kb) 140 141Strain fitness (log2 ratio) -1 0 1at 139.122 kb on - strand, within H281DRAFT_05380at 139.222 kb on + strand, within H281DRAFT_05380at 139.239 kb on + strand, within H281DRAFT_05380at 139.239 kb on + strand, within H281DRAFT_05380at 139.239 kb on + strand, within H281DRAFT_05380at 139.795 kb on + strand, within H281DRAFT_05380at 139.883 kb on - strand, within H281DRAFT_05380at 139.969 kb on + strandat 140.056 kb on - strandat 140.136 kb on - strand, within H281DRAFT_05381at 140.317 kb on - strandat 140.317 kb on - strandat 140.911 kb on + strand, within H281DRAFT_05382

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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139,122 - H281DRAFT_05380 0.25 -0.0
139,222 + H281DRAFT_05380 0.33 -0.3
139,239 + H281DRAFT_05380 0.34 +1.0
139,239 + H281DRAFT_05380 0.34 +0.4
139,239 + H281DRAFT_05380 0.34 +0.1
139,795 + H281DRAFT_05380 0.81 +0.6
139,883 - H281DRAFT_05380 0.88 -0.3
139,969 + -0.2
140,056 - -0.7
140,136 - H281DRAFT_05381 0.31 +0.6
140,317 - +0.5
140,317 - +0.1
140,911 + H281DRAFT_05382 0.30 -0.0

Or see this region's nucleotide sequence