Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05157

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05156 and H281DRAFT_05157 are separated by 91 nucleotidesH281DRAFT_05157 and H281DRAFT_05158 are separated by 192 nucleotides H281DRAFT_05156: H281DRAFT_05156 - nucleobase:cation symporter-1, NCS1 family, at 109,428 to 110,909 _05156 H281DRAFT_05157: H281DRAFT_05157 - allantoin racemase, at 111,001 to 111,828 _05157 H281DRAFT_05158: H281DRAFT_05158 - putative urate catabolism protein, at 112,021 to 112,971 _05158 Position (kb) 111 112Strain fitness (log2 ratio) -1 0 1at 110.068 kb on - strand, within H281DRAFT_05156at 110.152 kb on - strand, within H281DRAFT_05156at 110.617 kb on - strand, within H281DRAFT_05156at 110.718 kb on + strand, within H281DRAFT_05156at 110.890 kb on - strandat 111.647 kb on + strand, within H281DRAFT_05157at 111.816 kb on - strandat 111.996 kb on - strandat 112.039 kb on + strandat 112.040 kb on - strandat 112.040 kb on - strandat 112.271 kb on + strand, within H281DRAFT_05158at 112.456 kb on - strand, within H281DRAFT_05158at 112.586 kb on - strand, within H281DRAFT_05158at 112.589 kb on - strand, within H281DRAFT_05158at 112.736 kb on - strandat 112.762 kb on + strand, within H281DRAFT_05158

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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110,068 - H281DRAFT_05156 0.43 +0.7
110,152 - H281DRAFT_05156 0.49 +0.1
110,617 - H281DRAFT_05156 0.80 -0.6
110,718 + H281DRAFT_05156 0.87 -0.2
110,890 - -0.2
111,647 + H281DRAFT_05157 0.78 +0.6
111,816 - +0.1
111,996 - +0.1
112,039 + -0.1
112,040 - -0.3
112,040 - -0.1
112,271 + H281DRAFT_05158 0.26 +0.1
112,456 - H281DRAFT_05158 0.46 +0.4
112,586 - H281DRAFT_05158 0.59 +0.4
112,589 - H281DRAFT_05158 0.60 +0.7
112,736 - +0.9
112,762 + H281DRAFT_05158 0.78 +0.9

Or see this region's nucleotide sequence