Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03451

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03450 and H281DRAFT_03451 overlap by 4 nucleotidesH281DRAFT_03451 and H281DRAFT_03452 overlap by 4 nucleotides H281DRAFT_03450: H281DRAFT_03450 - ABC-2 type transport system permease protein, at 532,008 to 533,150 _03450 H281DRAFT_03451: H281DRAFT_03451 - ABC-2 type transport system ATP-binding protein, at 533,147 to 534,097 _03451 H281DRAFT_03452: H281DRAFT_03452 - HlyD family secretion protein, at 534,094 to 535,062 _03452 Position (kb) 533 534 535Strain fitness (log2 ratio) -1 0 1at 532.211 kb on + strand, within H281DRAFT_03450at 532.438 kb on + strand, within H281DRAFT_03450at 532.621 kb on + strand, within H281DRAFT_03450at 532.829 kb on + strand, within H281DRAFT_03450at 533.319 kb on - strand, within H281DRAFT_03451at 533.467 kb on - strand, within H281DRAFT_03451at 533.763 kb on + strand, within H281DRAFT_03451at 534.173 kb on + strandat 534.173 kb on + strandat 534.173 kb on + strandat 534.174 kb on - strandat 534.203 kb on + strand, within H281DRAFT_03452at 534.242 kb on + strand, within H281DRAFT_03452at 534.242 kb on + strand, within H281DRAFT_03452at 534.243 kb on - strand, within H281DRAFT_03452at 534.293 kb on - strand, within H281DRAFT_03452at 534.346 kb on + strand, within H281DRAFT_03452at 534.955 kb on + strand, within H281DRAFT_03452

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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532,211 + H281DRAFT_03450 0.18 -0.2
532,438 + H281DRAFT_03450 0.38 +0.3
532,621 + H281DRAFT_03450 0.54 +0.4
532,829 + H281DRAFT_03450 0.72 -0.7
533,319 - H281DRAFT_03451 0.18 +0.6
533,467 - H281DRAFT_03451 0.34 +0.3
533,763 + H281DRAFT_03451 0.65 +0.3
534,173 + +0.2
534,173 + +0.3
534,173 + -0.0
534,174 - +0.2
534,203 + H281DRAFT_03452 0.11 +0.3
534,242 + H281DRAFT_03452 0.15 +0.3
534,242 + H281DRAFT_03452 0.15 +0.4
534,243 - H281DRAFT_03452 0.15 +0.0
534,293 - H281DRAFT_03452 0.21 -0.1
534,346 + H281DRAFT_03452 0.26 -0.3
534,955 + H281DRAFT_03452 0.89 +0.5

Or see this region's nucleotide sequence