Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03372

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03371 and H281DRAFT_03372 are separated by 18 nucleotidesH281DRAFT_03372 and H281DRAFT_03373 are separated by 87 nucleotides H281DRAFT_03371: H281DRAFT_03371 - outer membrane protein, multidrug efflux system, at 433,501 to 434,988 _03371 H281DRAFT_03372: H281DRAFT_03372 - hypothetical protein, at 435,007 to 435,615 _03372 H281DRAFT_03373: H281DRAFT_03373 - Low temperature requirement protein LtrA, at 435,703 to 436,815 _03373 Position (kb) 435 436Strain fitness (log2 ratio) -1 0 1at 434.116 kb on + strand, within H281DRAFT_03371at 434.116 kb on + strand, within H281DRAFT_03371at 434.675 kb on - strand, within H281DRAFT_03371at 435.442 kb on - strand, within H281DRAFT_03372at 435.496 kb on - strand, within H281DRAFT_03372at 436.307 kb on - strand, within H281DRAFT_03373at 436.329 kb on - strand, within H281DRAFT_03373at 436.448 kb on + strand, within H281DRAFT_03373at 436.466 kb on + strand, within H281DRAFT_03373at 436.482 kb on - strand, within H281DRAFT_03373at 436.613 kb on + strand, within H281DRAFT_03373

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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434,116 + H281DRAFT_03371 0.41 +0.1
434,116 + H281DRAFT_03371 0.41 -0.0
434,675 - H281DRAFT_03371 0.79 +1.3
435,442 - H281DRAFT_03372 0.71 +0.7
435,496 - H281DRAFT_03372 0.80 +0.2
436,307 - H281DRAFT_03373 0.54 -0.6
436,329 - H281DRAFT_03373 0.56 +0.4
436,448 + H281DRAFT_03373 0.67 -0.2
436,466 + H281DRAFT_03373 0.69 -0.2
436,482 - H281DRAFT_03373 0.70 -0.9
436,613 + H281DRAFT_03373 0.82 -0.3

Or see this region's nucleotide sequence