Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02692

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02690 and H281DRAFT_02691 are separated by 15 nucleotidesH281DRAFT_02691 and H281DRAFT_02692 are separated by 536 nucleotidesH281DRAFT_02692 and H281DRAFT_02693 are separated by 78 nucleotidesH281DRAFT_02693 and H281DRAFT_02694 are separated by 104 nucleotides H281DRAFT_02690: H281DRAFT_02690 - hypothetical protein, at 272,279 to 272,713 _02690 H281DRAFT_02691: H281DRAFT_02691 - transcriptional regulator, ArsR family, at 272,729 to 273,046 _02691 H281DRAFT_02692: H281DRAFT_02692 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 273,583 to 274,182 _02692 H281DRAFT_02693: H281DRAFT_02693 - transcriptional regulator, DeoR family, at 274,261 to 275,016 _02693 H281DRAFT_02694: H281DRAFT_02694 - DNA binding domain-containing protein, excisionase family, at 275,121 to 276,368 _02694 Position (kb) 273 274 275Strain fitness (log2 ratio) -1 0 1 2 3at 272.690 kb on - strandat 272.872 kb on + strand, within H281DRAFT_02691at 272.873 kb on - strand, within H281DRAFT_02691at 272.882 kb on + strand, within H281DRAFT_02691at 273.154 kb on + strandat 273.319 kb on + strandat 273.320 kb on - strandat 273.788 kb on + strand, within H281DRAFT_02692at 273.887 kb on - strand, within H281DRAFT_02692at 273.887 kb on - strand, within H281DRAFT_02692at 274.278 kb on + strandat 274.690 kb on + strand, within H281DRAFT_02693at 274.691 kb on - strand, within H281DRAFT_02693

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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272,690 - -0.9
272,872 + H281DRAFT_02691 0.45 +0.5
272,873 - H281DRAFT_02691 0.45 -0.6
272,882 + H281DRAFT_02691 0.48 -0.4
273,154 + +0.3
273,319 + -0.1
273,320 - +0.4
273,788 + H281DRAFT_02692 0.34 -0.2
273,887 - H281DRAFT_02692 0.51 +2.9
273,887 - H281DRAFT_02692 0.51 +0.2
274,278 + +0.3
274,690 + H281DRAFT_02693 0.57 +0.3
274,691 - H281DRAFT_02693 0.57 +0.5

Or see this region's nucleotide sequence