Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01775

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01774 and H281DRAFT_01775 are separated by 40 nucleotidesH281DRAFT_01775 and H281DRAFT_01776 are separated by 584 nucleotides H281DRAFT_01774: H281DRAFT_01774 - Enoyl-CoA hydratase/carnithine racemase, at 675,182 to 676,021 _01774 H281DRAFT_01775: H281DRAFT_01775 - Putative intracellular protease/amidase, at 676,062 to 676,739 _01775 H281DRAFT_01776: H281DRAFT_01776 - two component transcriptional regulator, LuxR family, at 677,324 to 678,058 _01776 Position (kb) 676 677Strain fitness (log2 ratio) -1 0 1at 675.106 kb on - strandat 676.009 kb on + strandat 676.040 kb on + strandat 676.042 kb on + strandat 676.326 kb on + strand, within H281DRAFT_01775at 676.327 kb on - strand, within H281DRAFT_01775at 676.459 kb on + strand, within H281DRAFT_01775at 676.648 kb on + strand, within H281DRAFT_01775at 676.842 kb on - strandat 676.851 kb on + strandat 677.236 kb on + strandat 677.387 kb on + strandat 677.388 kb on - strandat 677.522 kb on - strand, within H281DRAFT_01776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
675,106 - +0.4
676,009 + -0.5
676,040 + +0.2
676,042 + -0.2
676,326 + H281DRAFT_01775 0.39 +1.0
676,327 - H281DRAFT_01775 0.39 +0.9
676,459 + H281DRAFT_01775 0.59 +0.9
676,648 + H281DRAFT_01775 0.86 +0.1
676,842 - -0.2
676,851 + +0.2
677,236 + -0.3
677,387 + +0.7
677,388 - +0.0
677,522 - H281DRAFT_01776 0.27 +0.1

Or see this region's nucleotide sequence