Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01518

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01517 and H281DRAFT_01518 are separated by 104 nucleotidesH281DRAFT_01518 and H281DRAFT_01519 are separated by 238 nucleotides H281DRAFT_01517: H281DRAFT_01517 - L-idonate 5-dehydrogenase, at 387,560 to 388,606 _01517 H281DRAFT_01518: H281DRAFT_01518 - D-mannonate dehydratase (EC 4.2.1.8), at 388,711 to 389,919 _01518 H281DRAFT_01519: H281DRAFT_01519 - fructuronate reductase, at 390,158 to 391,654 _01519 Position (kb) 388 389 390Strain fitness (log2 ratio) -1 0 1at 389.079 kb on - strand, within H281DRAFT_01518at 389.122 kb on - strand, within H281DRAFT_01518at 389.446 kb on + strand, within H281DRAFT_01518at 389.890 kb on - strandat 390.578 kb on + strand, within H281DRAFT_01519at 390.781 kb on - strand, within H281DRAFT_01519

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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389,079 - H281DRAFT_01518 0.30 +0.6
389,122 - H281DRAFT_01518 0.34 +0.6
389,446 + H281DRAFT_01518 0.61 +0.6
389,890 - -0.2
390,578 + H281DRAFT_01519 0.28 -1.2
390,781 - H281DRAFT_01519 0.42 +0.5

Or see this region's nucleotide sequence