Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01289

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01287 and H281DRAFT_01288 overlap by 4 nucleotidesH281DRAFT_01288 and H281DRAFT_01289 overlap by 4 nucleotidesH281DRAFT_01289 and H281DRAFT_01290 overlap by 4 nucleotidesH281DRAFT_01290 and H281DRAFT_01291 are separated by 108 nucleotides H281DRAFT_01287: H281DRAFT_01287 - mxaK protein, at 125,497 to 126,066 _01287 H281DRAFT_01288: H281DRAFT_01288 - mxaC protein, at 126,063 to 127,052 _01288 H281DRAFT_01289: H281DRAFT_01289 - mxaA protein, at 127,049 to 127,984 _01289 H281DRAFT_01290: H281DRAFT_01290 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 127,981 to 128,835 _01290 H281DRAFT_01291: H281DRAFT_01291 - MoxR-like ATPase, at 128,944 to 129,963 _01291 Position (kb) 127 128Strain fitness (log2 ratio) -1 0 1at 127.785 kb on + strand, within H281DRAFT_01289at 128.043 kb on - strandat 128.246 kb on + strand, within H281DRAFT_01290at 128.246 kb on + strand, within H281DRAFT_01290

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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127,785 + H281DRAFT_01289 0.79 +0.7
128,043 - +0.1
128,246 + H281DRAFT_01290 0.31 +0.3
128,246 + H281DRAFT_01290 0.31 +0.3

Or see this region's nucleotide sequence