Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00197

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00195 and H281DRAFT_00196 are separated by 173 nucleotidesH281DRAFT_00196 and H281DRAFT_00197 are separated by 54 nucleotidesH281DRAFT_00197 and H281DRAFT_00198 are separated by 422 nucleotides H281DRAFT_00195: H281DRAFT_00195 - transcriptional regulator, XRE family, at 209,575 to 210,399 _00195 H281DRAFT_00196: H281DRAFT_00196 - Ubiquinone/menaquinone biosynthesis C-methylase UbiE, at 210,573 to 211,325 _00196 H281DRAFT_00197: H281DRAFT_00197 - Phosphoenolpyruvate carboxylase, type 1, at 211,380 to 214,589 _00197 H281DRAFT_00198: H281DRAFT_00198 - hydroxymethylbilane synthase, at 215,012 to 216,049 _00198 Position (kb) 211 212 213 214 215Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 210.429 kb on + strandat 210.429 kb on + strandat 210.430 kb on - strandat 210.442 kb on - strandat 210.477 kb on - strandat 210.568 kb on + strandat 210.625 kb on - strandat 210.778 kb on - strand, within H281DRAFT_00196at 210.874 kb on + strand, within H281DRAFT_00196at 211.040 kb on + strand, within H281DRAFT_00196at 211.040 kb on + strand, within H281DRAFT_00196at 211.041 kb on - strand, within H281DRAFT_00196at 211.077 kb on - strand, within H281DRAFT_00196at 211.274 kb on - strandat 211.274 kb on - strandat 211.499 kb on + strandat 211.499 kb on + strandat 211.500 kb on - strandat 211.604 kb on + strandat 211.849 kb on + strand, within H281DRAFT_00197at 211.850 kb on - strand, within H281DRAFT_00197at 212.054 kb on - strand, within H281DRAFT_00197at 212.287 kb on + strand, within H281DRAFT_00197at 212.288 kb on - strand, within H281DRAFT_00197at 212.392 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.792 kb on - strand, within H281DRAFT_00197at 212.869 kb on + strand, within H281DRAFT_00197at 213.187 kb on + strand, within H281DRAFT_00197at 213.188 kb on - strand, within H281DRAFT_00197at 213.340 kb on + strand, within H281DRAFT_00197at 213.544 kb on + strand, within H281DRAFT_00197at 213.544 kb on + strand, within H281DRAFT_00197at 213.651 kb on - strand, within H281DRAFT_00197at 213.851 kb on - strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.953 kb on - strand, within H281DRAFT_00197at 214.144 kb on + strand, within H281DRAFT_00197at 214.144 kb on + strand, within H281DRAFT_00197at 214.621 kb on + strandat 214.637 kb on - strandat 214.690 kb on + strandat 214.691 kb on - strandat 214.691 kb on - strandat 214.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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210,429 + -0.6
210,429 + +0.6
210,430 - +0.4
210,442 - -0.0
210,477 - +0.3
210,568 + -0.3
210,625 - -0.5
210,778 - H281DRAFT_00196 0.27 -0.1
210,874 + H281DRAFT_00196 0.40 +0.5
211,040 + H281DRAFT_00196 0.62 +0.3
211,040 + H281DRAFT_00196 0.62 +0.5
211,041 - H281DRAFT_00196 0.62 -0.0
211,077 - H281DRAFT_00196 0.67 +0.0
211,274 - +0.1
211,274 - -0.2
211,499 + -4.0
211,499 + -2.1
211,500 - -0.8
211,604 + -3.9
211,849 + H281DRAFT_00197 0.15 -4.4
211,850 - H281DRAFT_00197 0.15 -1.7
212,054 - H281DRAFT_00197 0.21 -5.2
212,287 + H281DRAFT_00197 0.28 -4.3
212,288 - H281DRAFT_00197 0.28 -2.5
212,392 + H281DRAFT_00197 0.32 -4.4
212,695 + H281DRAFT_00197 0.41 -1.5
212,695 + H281DRAFT_00197 0.41 -3.7
212,695 + H281DRAFT_00197 0.41 -2.2
212,695 + H281DRAFT_00197 0.41 -4.5
212,792 - H281DRAFT_00197 0.44 -3.4
212,869 + H281DRAFT_00197 0.46 -3.9
213,187 + H281DRAFT_00197 0.56 -1.8
213,188 - H281DRAFT_00197 0.56 -3.4
213,340 + H281DRAFT_00197 0.61 -2.4
213,544 + H281DRAFT_00197 0.67 -5.2
213,544 + H281DRAFT_00197 0.67 -2.8
213,651 - H281DRAFT_00197 0.71 -4.8
213,851 - H281DRAFT_00197 0.77 -5.1
213,952 + H281DRAFT_00197 0.80 -5.1
213,952 + H281DRAFT_00197 0.80 -4.8
213,952 + H281DRAFT_00197 0.80 -5.0
213,952 + H281DRAFT_00197 0.80 -4.3
213,952 + H281DRAFT_00197 0.80 -4.1
213,953 - H281DRAFT_00197 0.80 -2.8
214,144 + H281DRAFT_00197 0.86 -1.4
214,144 + H281DRAFT_00197 0.86 -3.8
214,621 + -2.0
214,637 - -1.0
214,690 + -2.8
214,691 - -0.3
214,691 - +0.6
214,981 + -4.6

Or see this region's nucleotide sequence