Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35990

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35980 and PGA1_c35990 overlap by 1 nucleotidesPGA1_c35990 and PGA1_c36000 are separated by 24 nucleotidesPGA1_c36000 and PGA1_c36010 are separated by 15 nucleotides PGA1_c35980: PGA1_c35980 - lipopolysaccharide export system ATP-binding protein LptB, at 3,766,950 to 3,767,708 _c35980 PGA1_c35990: PGA1_c35990 - OstA-like protein, similar to lipopolysaccharide export system protein LptA, at 3,767,708 to 3,768,187 _c35990 PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811 _c36000 PGA1_c36010: PGA1_c36010 - arabinose 5-phosphate isomerase KdsD, at 3,768,827 to 3,769,798 _c36010 Position (kb) 3767 3768 3769Strain fitness (log2 ratio) -2 -1 0 1at 3766.717 kb on + strandat 3766.720 kb on - strandat 3766.736 kb on + strandat 3766.761 kb on - strandat 3766.761 kb on - strandat 3766.799 kb on - strandat 3766.864 kb on - strandat 3766.875 kb on + strandat 3766.943 kb on + strandat 3766.948 kb on + strandat 3768.832 kb on - strandat 3768.832 kb on - strandat 3768.832 kb on - strandat 3768.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,766,717 + -0.6
3,766,720 - -2.7
3,766,736 + +0.3
3,766,761 - -1.2
3,766,761 - -2.0
3,766,799 - +0.0
3,766,864 - +1.0
3,766,875 + +0.2
3,766,943 + -0.4
3,766,948 + -0.8
3,768,832 - +0.1
3,768,832 - -0.4
3,768,832 - +1.1
3,768,832 - +0.5

Or see this region's nucleotide sequence