Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13250

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c13240 and PGA1_c13250 are separated by 123 nucleotidesPGA1_c13250 and PGA1_c13260 are separated by 137 nucleotides PGA1_c13240: PGA1_c13240 - transcriptional regulator, LysR family, at 1,369,357 to 1,370,316 _c13240 PGA1_c13250: PGA1_c13250 - Zn-dependent hydrolases, including glyoxylases, at 1,370,440 to 1,371,426 _c13250 PGA1_c13260: PGA1_c13260 - phosphoribosylformylglycinamidine cyclo-ligase PurM, at 1,371,564 to 1,372,610 _c13260 Position (kb) 1370 1371 1372Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1369.502 kb on + strand, within PGA1_c13240at 1369.543 kb on - strand, within PGA1_c13240at 1369.563 kb on + strand, within PGA1_c13240at 1369.601 kb on - strand, within PGA1_c13240at 1369.606 kb on + strand, within PGA1_c13240at 1369.606 kb on + strand, within PGA1_c13240at 1369.606 kb on + strand, within PGA1_c13240at 1369.614 kb on - strand, within PGA1_c13240at 1369.614 kb on - strand, within PGA1_c13240at 1369.647 kb on - strand, within PGA1_c13240at 1369.658 kb on + strand, within PGA1_c13240at 1369.660 kb on + strand, within PGA1_c13240at 1369.713 kb on - strand, within PGA1_c13240at 1369.743 kb on + strand, within PGA1_c13240at 1369.796 kb on - strand, within PGA1_c13240at 1369.912 kb on + strand, within PGA1_c13240at 1369.970 kb on - strand, within PGA1_c13240at 1369.986 kb on + strand, within PGA1_c13240at 1369.996 kb on + strand, within PGA1_c13240at 1369.996 kb on + strand, within PGA1_c13240at 1370.030 kb on + strand, within PGA1_c13240at 1370.031 kb on + strand, within PGA1_c13240at 1370.038 kb on - strand, within PGA1_c13240at 1370.038 kb on - strand, within PGA1_c13240at 1370.039 kb on - strand, within PGA1_c13240at 1370.039 kb on - strand, within PGA1_c13240at 1370.078 kb on - strand, within PGA1_c13240at 1370.093 kb on - strand, within PGA1_c13240at 1370.122 kb on + strand, within PGA1_c13240at 1370.238 kb on - strandat 1370.252 kb on + strandat 1370.266 kb on + strandat 1370.267 kb on + strandat 1370.267 kb on + strandat 1370.394 kb on + strandat 1370.496 kb on - strandat 1370.536 kb on - strandat 1370.537 kb on - strandat 1370.636 kb on + strand, within PGA1_c13250at 1370.662 kb on - strand, within PGA1_c13250at 1370.664 kb on + strand, within PGA1_c13250at 1370.664 kb on + strand, within PGA1_c13250at 1370.664 kb on + strand, within PGA1_c13250at 1370.688 kb on - strand, within PGA1_c13250at 1370.698 kb on - strand, within PGA1_c13250at 1370.713 kb on + strand, within PGA1_c13250at 1370.713 kb on + strand, within PGA1_c13250at 1370.713 kb on + strand, within PGA1_c13250at 1370.762 kb on - strand, within PGA1_c13250at 1370.775 kb on - strand, within PGA1_c13250at 1370.790 kb on - strand, within PGA1_c13250at 1370.806 kb on + strand, within PGA1_c13250at 1370.809 kb on - strand, within PGA1_c13250at 1370.814 kb on - strand, within PGA1_c13250at 1370.849 kb on + strand, within PGA1_c13250at 1370.849 kb on + strand, within PGA1_c13250at 1370.849 kb on + strand, within PGA1_c13250at 1370.891 kb on - strand, within PGA1_c13250at 1370.910 kb on + strand, within PGA1_c13250at 1370.910 kb on + strand, within PGA1_c13250at 1370.918 kb on - strand, within PGA1_c13250at 1370.918 kb on - strand, within PGA1_c13250at 1370.918 kb on - strand, within PGA1_c13250at 1370.953 kb on + strand, within PGA1_c13250at 1370.964 kb on + strand, within PGA1_c13250at 1370.995 kb on + strand, within PGA1_c13250at 1371.062 kb on + strand, within PGA1_c13250at 1371.102 kb on + strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.150 kb on - strand, within PGA1_c13250at 1371.176 kb on + strand, within PGA1_c13250at 1371.189 kb on + strand, within PGA1_c13250at 1371.189 kb on + strand, within PGA1_c13250at 1371.189 kb on + strand, within PGA1_c13250at 1371.197 kb on - strand, within PGA1_c13250at 1371.199 kb on + strand, within PGA1_c13250at 1371.212 kb on + strand, within PGA1_c13250at 1371.215 kb on - strand, within PGA1_c13250at 1371.215 kb on - strand, within PGA1_c13250at 1371.215 kb on - strand, within PGA1_c13250at 1371.277 kb on + strand, within PGA1_c13250at 1371.285 kb on - strand, within PGA1_c13250at 1371.285 kb on - strand, within PGA1_c13250at 1371.319 kb on + strand, within PGA1_c13250at 1371.330 kb on - strandat 1371.463 kb on - strandat 1371.487 kb on - strandat 1371.533 kb on - strandat 1371.535 kb on - strandat 1371.564 kb on - strandat 1371.590 kb on - strandat 1371.628 kb on + strandat 1371.675 kb on + strand, within PGA1_c13260at 1371.675 kb on + strand, within PGA1_c13260at 1371.683 kb on - strand, within PGA1_c13260at 1371.722 kb on - strand, within PGA1_c13260at 1372.087 kb on - strand, within PGA1_c13260at 1372.128 kb on + strand, within PGA1_c13260at 1372.219 kb on + strand, within PGA1_c13260at 1372.235 kb on + strand, within PGA1_c13260at 1372.283 kb on + strand, within PGA1_c13260at 1372.291 kb on - strand, within PGA1_c13260at 1372.387 kb on + strand, within PGA1_c13260at 1372.387 kb on + strand, within PGA1_c13260at 1372.387 kb on + strand, within PGA1_c13260at 1372.395 kb on - strand, within PGA1_c13260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
1,369,502 + PGA1_c13240 0.15 +0.6
1,369,543 - PGA1_c13240 0.19 +0.4
1,369,563 + PGA1_c13240 0.21 -0.6
1,369,601 - PGA1_c13240 0.25 -0.3
1,369,606 + PGA1_c13240 0.26 -0.9
1,369,606 + PGA1_c13240 0.26 +0.5
1,369,606 + PGA1_c13240 0.26 -1.2
1,369,614 - PGA1_c13240 0.27 +0.3
1,369,614 - PGA1_c13240 0.27 +0.0
1,369,647 - PGA1_c13240 0.30 +0.8
1,369,658 + PGA1_c13240 0.31 -1.1
1,369,660 + PGA1_c13240 0.32 +0.1
1,369,713 - PGA1_c13240 0.37 -1.9
1,369,743 + PGA1_c13240 0.40 +1.2
1,369,796 - PGA1_c13240 0.46 -0.1
1,369,912 + PGA1_c13240 0.58 -0.2
1,369,970 - PGA1_c13240 0.64 -0.9
1,369,986 + PGA1_c13240 0.66 -1.3
1,369,996 + PGA1_c13240 0.67 +1.7
1,369,996 + PGA1_c13240 0.67 +0.6
1,370,030 + PGA1_c13240 0.70 +0.1
1,370,031 + PGA1_c13240 0.70 +0.8
1,370,038 - PGA1_c13240 0.71 +0.0
1,370,038 - PGA1_c13240 0.71 +0.8
1,370,039 - PGA1_c13240 0.71 -0.6
1,370,039 - PGA1_c13240 0.71 -0.3
1,370,078 - PGA1_c13240 0.75 -0.9
1,370,093 - PGA1_c13240 0.77 +0.9
1,370,122 + PGA1_c13240 0.80 +0.3
1,370,238 - +1.6
1,370,252 + +0.2
1,370,266 + -1.0
1,370,267 + +0.8
1,370,267 + -0.2
1,370,394 + -0.4
1,370,496 - +0.4
1,370,536 - -1.2
1,370,537 - +0.3
1,370,636 + PGA1_c13250 0.20 -0.1
1,370,662 - PGA1_c13250 0.22 +0.9
1,370,664 + PGA1_c13250 0.23 -0.1
1,370,664 + PGA1_c13250 0.23 +1.1
1,370,664 + PGA1_c13250 0.23 -0.2
1,370,688 - PGA1_c13250 0.25 -0.3
1,370,698 - PGA1_c13250 0.26 +2.2
1,370,713 + PGA1_c13250 0.28 +0.3
1,370,713 + PGA1_c13250 0.28 -1.0
1,370,713 + PGA1_c13250 0.28 +0.3
1,370,762 - PGA1_c13250 0.33 +1.3
1,370,775 - PGA1_c13250 0.34 +0.5
1,370,790 - PGA1_c13250 0.35 -1.1
1,370,806 + PGA1_c13250 0.37 +1.2
1,370,809 - PGA1_c13250 0.37 +0.7
1,370,814 - PGA1_c13250 0.38 +0.2
1,370,849 + PGA1_c13250 0.41 +0.8
1,370,849 + PGA1_c13250 0.41 +0.4
1,370,849 + PGA1_c13250 0.41 +1.7
1,370,891 - PGA1_c13250 0.46 -0.8
1,370,910 + PGA1_c13250 0.48 -2.7
1,370,910 + PGA1_c13250 0.48 +0.2
1,370,918 - PGA1_c13250 0.48 +0.8
1,370,918 - PGA1_c13250 0.48 -0.1
1,370,918 - PGA1_c13250 0.48 -1.0
1,370,953 + PGA1_c13250 0.52 -0.3
1,370,964 + PGA1_c13250 0.53 -0.9
1,370,995 + PGA1_c13250 0.56 -0.6
1,371,062 + PGA1_c13250 0.63 -0.1
1,371,102 + PGA1_c13250 0.67 +0.4
1,371,105 - PGA1_c13250 0.67 +0.2
1,371,105 - PGA1_c13250 0.67 -0.3
1,371,105 - PGA1_c13250 0.67 -0.7
1,371,105 - PGA1_c13250 0.67 +1.0
1,371,150 - PGA1_c13250 0.72 +0.3
1,371,176 + PGA1_c13250 0.75 -0.3
1,371,189 + PGA1_c13250 0.76 -0.4
1,371,189 + PGA1_c13250 0.76 +0.2
1,371,189 + PGA1_c13250 0.76 +0.7
1,371,197 - PGA1_c13250 0.77 +1.7
1,371,199 + PGA1_c13250 0.77 +0.3
1,371,212 + PGA1_c13250 0.78 +2.9
1,371,215 - PGA1_c13250 0.79 +1.2
1,371,215 - PGA1_c13250 0.79 -1.9
1,371,215 - PGA1_c13250 0.79 -1.1
1,371,277 + PGA1_c13250 0.85 +0.2
1,371,285 - PGA1_c13250 0.86 +0.2
1,371,285 - PGA1_c13250 0.86 -0.8
1,371,319 + PGA1_c13250 0.89 +1.0
1,371,330 - +0.4
1,371,463 - -0.2
1,371,487 - -0.9
1,371,533 - +0.8
1,371,535 - -1.0
1,371,564 - -2.1
1,371,590 - +1.4
1,371,628 + -0.5
1,371,675 + PGA1_c13260 0.11 +0.1
1,371,675 + PGA1_c13260 0.11 -0.3
1,371,683 - PGA1_c13260 0.11 -0.8
1,371,722 - PGA1_c13260 0.15 -0.2
1,372,087 - PGA1_c13260 0.50 +0.2
1,372,128 + PGA1_c13260 0.54 +0.1
1,372,219 + PGA1_c13260 0.63 -0.1
1,372,235 + PGA1_c13260 0.64 +1.0
1,372,283 + PGA1_c13260 0.69 +0.4
1,372,291 - PGA1_c13260 0.69 +0.3
1,372,387 + PGA1_c13260 0.79 -0.2
1,372,387 + PGA1_c13260 0.79 +0.4
1,372,387 + PGA1_c13260 0.79 +1.2
1,372,395 - PGA1_c13260 0.79 -2.2

Or see this region's nucleotide sequence