Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3461 and Dsui_3462 are separated by 335 nucleotides Dsui_3462 and Dsui_3463 are separated by 4 nucleotides Dsui_3463 and Dsui_3464 are separated by 2 nucleotides
Dsui_3461: Dsui_3461 - hypothetical protein, at 3,723,342 to 3,724,892
_3461
Dsui_3462: Dsui_3462 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 3,725,228 to 3,726,214
_3462
Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037
_3463
Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831
_3464
Position (kb)
3725
3726
3727 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3724.306 kb on - strand at 3724.367 kb on + strand at 3724.409 kb on - strand at 3724.744 kb on + strand at 3724.800 kb on + strand at 3724.808 kb on - strand at 3725.027 kb on - strand at 3725.027 kb on - strand at 3725.095 kb on + strand at 3725.103 kb on - strand at 3725.154 kb on + strand at 3725.251 kb on - strand at 3725.313 kb on + strand at 3725.347 kb on + strand, within Dsui_3462 at 3725.397 kb on + strand, within Dsui_3462 at 3725.464 kb on - strand at 3725.503 kb on + strand, within Dsui_3462 at 3725.526 kb on - strand at 3725.526 kb on - strand, within Dsui_3462 at 3725.594 kb on - strand, within Dsui_3462 at 3725.624 kb on + strand, within Dsui_3462 at 3725.888 kb on + strand, within Dsui_3462 at 3725.968 kb on + strand at 3725.977 kb on - strand, within Dsui_3462 at 3726.019 kb on + strand, within Dsui_3462 at 3726.032 kb on - strand, within Dsui_3462 at 3726.049 kb on + strand, within Dsui_3462 at 3726.057 kb on - strand at 3726.062 kb on - strand, within Dsui_3462 at 3726.187 kb on + strand at 3726.246 kb on - strand at 3726.326 kb on + strand, within Dsui_3463 at 3726.329 kb on - strand, within Dsui_3463 at 3726.337 kb on + strand, within Dsui_3463 at 3726.454 kb on + strand, within Dsui_3463 at 3726.501 kb on - strand, within Dsui_3463 at 3726.538 kb on + strand, within Dsui_3463 at 3726.548 kb on + strand, within Dsui_3463 at 3726.556 kb on + strand, within Dsui_3463 at 3726.621 kb on + strand, within Dsui_3463 at 3726.723 kb on - strand at 3726.795 kb on + strand, within Dsui_3463 at 3726.804 kb on - strand, within Dsui_3463 at 3726.949 kb on + strand, within Dsui_3463 at 3727.026 kb on + strand at 3727.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,724,306 - +0.2 3,724,367 + -1.4 3,724,409 - -0.8 3,724,744 + +0.2 3,724,800 + -0.8 3,724,808 - -0.8 3,725,027 - -0.8 3,725,027 - +0.2 3,725,095 + +0.2 3,725,103 - +0.2 3,725,154 + +0.2 3,725,251 - -0.8 3,725,313 + +1.8 3,725,347 + Dsui_3462 0.12 -0.8 3,725,397 + Dsui_3462 0.17 +0.2 3,725,464 - +0.2 3,725,503 + Dsui_3462 0.28 -1.4 3,725,526 - +0.2 3,725,526 - Dsui_3462 0.30 -0.8 3,725,594 - Dsui_3462 0.37 -0.8 3,725,624 + Dsui_3462 0.40 -1.4 3,725,888 + Dsui_3462 0.67 +0.2 3,725,968 + -0.8 3,725,977 - Dsui_3462 0.76 +0.2 3,726,019 + Dsui_3462 0.80 -1.4 3,726,032 - Dsui_3462 0.81 +0.2 3,726,049 + Dsui_3462 0.83 -1.4 3,726,057 - +0.2 3,726,062 - Dsui_3462 0.84 -1.4 3,726,187 + -0.8 3,726,246 - -0.8 3,726,326 + Dsui_3463 0.13 +0.2 3,726,329 - Dsui_3463 0.13 -1.4 3,726,337 + Dsui_3463 0.14 -0.8 3,726,454 + Dsui_3463 0.29 -1.4 3,726,501 - Dsui_3463 0.34 +0.2 3,726,538 + Dsui_3463 0.39 +0.2 3,726,548 + Dsui_3463 0.40 +0.2 3,726,556 + Dsui_3463 0.41 -0.8 3,726,621 + Dsui_3463 0.49 +0.2 3,726,723 - +0.2 3,726,795 + Dsui_3463 0.70 +0.2 3,726,804 - Dsui_3463 0.71 -1.4 3,726,949 + Dsui_3463 0.89 -1.4 3,727,026 + -2.4 3,727,104 - -0.8
Or see this region's nucleotide sequence