Strain Fitness in Dechlorosoma suillum PS around Dsui_3448

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3447 and Dsui_3448 overlap by 1 nucleotidesDsui_3448 and Dsui_3449 are separated by 66 nucleotides Dsui_3447: Dsui_3447 - signal transduction histidine kinase, at 3,706,188 to 3,707,558 _3447 Dsui_3448: Dsui_3448 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,707,558 to 3,708,256 _3448 Dsui_3449: Dsui_3449 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,708,323 to 3,710,467 _3449 Position (kb) 3707 3708 3709Strain fitness (log2 ratio) -2 -1 0 1at 3706.848 kb on + strandat 3706.958 kb on - strandat 3707.138 kb on - strand, within Dsui_3447at 3707.399 kb on + strandat 3707.400 kb on - strand, within Dsui_3447at 3707.432 kb on + strandat 3707.475 kb on + strandat 3707.633 kb on - strand, within Dsui_3448at 3707.635 kb on + strandat 3707.824 kb on - strand, within Dsui_3448at 3707.907 kb on - strand, within Dsui_3448at 3708.043 kb on - strand, within Dsui_3448at 3708.103 kb on - strand, within Dsui_3448at 3708.134 kb on + strandat 3708.137 kb on - strand, within Dsui_3448at 3708.234 kb on - strandat 3708.266 kb on - strandat 3708.266 kb on - strandat 3708.339 kb on - strandat 3708.667 kb on + strand, within Dsui_3449at 3708.726 kb on - strand, within Dsui_3449at 3709.049 kb on - strandat 3709.183 kb on + strand, within Dsui_3449at 3709.209 kb on + strand, within Dsui_3449at 3709.223 kb on - strand, within Dsui_3449at 3709.256 kb on + strand, within Dsui_3449

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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3,706,848 + -0.8
3,706,958 - +0.2
3,707,138 - Dsui_3447 0.69 -1.4
3,707,399 + +0.2
3,707,400 - Dsui_3447 0.88 -1.4
3,707,432 + +0.2
3,707,475 + +0.2
3,707,633 - Dsui_3448 0.11 -1.8
3,707,635 + -1.4
3,707,824 - Dsui_3448 0.38 -2.6
3,707,907 - Dsui_3448 0.50 -2.1
3,708,043 - Dsui_3448 0.69 -1.4
3,708,103 - Dsui_3448 0.78 -0.8
3,708,134 + +0.2
3,708,137 - Dsui_3448 0.83 -0.8
3,708,234 - -2.4
3,708,266 - +0.2
3,708,266 - +0.2
3,708,339 - +0.2
3,708,667 + Dsui_3449 0.16 +0.3
3,708,726 - Dsui_3449 0.19 -2.4
3,709,049 - -0.8
3,709,183 + Dsui_3449 0.40 +0.1
3,709,209 + Dsui_3449 0.41 +0.1
3,709,223 - Dsui_3449 0.42 +0.2
3,709,256 + Dsui_3449 0.43 +0.2

Or see this region's nucleotide sequence