Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3442 and Dsui_3443 are separated by 82 nucleotides Dsui_3443 and Dsui_3444 are separated by 282 nucleotides
Dsui_3442: Dsui_3442 - NADH dehydrogenase, FAD-containing subunit, at 3,699,577 to 3,700,851
_3442
Dsui_3443: Dsui_3443 - RND family efflux transporter, MFP subunit, at 3,700,934 to 3,702,013
_3443
Dsui_3444: Dsui_3444 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 3,702,296 to 3,703,393
_3444
Position (kb)
3700
3701
3702
3703 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3700.034 kb on - strand at 3700.046 kb on - strand, within Dsui_3442 at 3700.169 kb on - strand, within Dsui_3442 at 3700.184 kb on - strand at 3700.227 kb on - strand, within Dsui_3442 at 3700.257 kb on + strand, within Dsui_3442 at 3700.265 kb on - strand, within Dsui_3442 at 3700.286 kb on - strand, within Dsui_3442 at 3700.302 kb on - strand, within Dsui_3442 at 3700.302 kb on - strand, within Dsui_3442 at 3700.404 kb on + strand, within Dsui_3442 at 3700.530 kb on - strand, within Dsui_3442 at 3700.635 kb on + strand at 3700.637 kb on - strand, within Dsui_3442 at 3700.694 kb on + strand at 3700.718 kb on - strand, within Dsui_3442 at 3700.909 kb on + strand at 3701.078 kb on + strand, within Dsui_3443 at 3701.086 kb on - strand, within Dsui_3443 at 3701.242 kb on - strand, within Dsui_3443 at 3701.373 kb on - strand at 3701.469 kb on - strand at 3701.524 kb on - strand, within Dsui_3443 at 3701.568 kb on + strand at 3701.574 kb on + strand, within Dsui_3443 at 3701.579 kb on + strand, within Dsui_3443 at 3701.587 kb on - strand at 3701.587 kb on - strand, within Dsui_3443 at 3701.625 kb on - strand, within Dsui_3443 at 3701.651 kb on + strand, within Dsui_3443 at 3701.852 kb on - strand at 3701.913 kb on + strand at 3701.932 kb on - strand at 3702.187 kb on - strand at 3702.279 kb on + strand at 3702.286 kb on + strand at 3702.347 kb on - strand at 3702.528 kb on + strand, within Dsui_3444 at 3702.579 kb on - strand, within Dsui_3444 at 3702.624 kb on + strand, within Dsui_3444 at 3702.654 kb on - strand, within Dsui_3444 at 3702.677 kb on - strand, within Dsui_3444 at 3702.775 kb on + strand, within Dsui_3444 at 3702.781 kb on - strand, within Dsui_3444 at 3702.783 kb on + strand, within Dsui_3444 at 3702.783 kb on - strand, within Dsui_3444 at 3702.961 kb on + strand, within Dsui_3444 at 3702.980 kb on + strand, within Dsui_3444
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,700,034 - +0.2 3,700,046 - Dsui_3442 0.37 -0.8 3,700,169 - Dsui_3442 0.46 -1.8 3,700,184 - +0.2 3,700,227 - Dsui_3442 0.51 -1.4 3,700,257 + Dsui_3442 0.53 +0.2 3,700,265 - Dsui_3442 0.54 -0.8 3,700,286 - Dsui_3442 0.56 +0.2 3,700,302 - Dsui_3442 0.57 -1.8 3,700,302 - Dsui_3442 0.57 -0.8 3,700,404 + Dsui_3442 0.65 -0.4 3,700,530 - Dsui_3442 0.75 +0.0 3,700,635 + +0.2 3,700,637 - Dsui_3442 0.83 -0.8 3,700,694 + +0.2 3,700,718 - Dsui_3442 0.89 -2.1 3,700,909 + +0.2 3,701,078 + Dsui_3443 0.13 +0.2 3,701,086 - Dsui_3443 0.14 +0.2 3,701,242 - Dsui_3443 0.29 -0.8 3,701,373 - +0.2 3,701,469 - +0.2 3,701,524 - Dsui_3443 0.55 -0.8 3,701,568 + +0.2 3,701,574 + Dsui_3443 0.59 -2.1 3,701,579 + Dsui_3443 0.60 -1.8 3,701,587 - -1.8 3,701,587 - Dsui_3443 0.60 -2.1 3,701,625 - Dsui_3443 0.64 -1.8 3,701,651 + Dsui_3443 0.66 -1.4 3,701,852 - -1.4 3,701,913 + +0.2 3,701,932 - -2.1 3,702,187 - -1.8 3,702,279 + +0.4 3,702,286 + +0.0 3,702,347 - -2.1 3,702,528 + Dsui_3444 0.21 +0.5 3,702,579 - Dsui_3444 0.26 +0.2 3,702,624 + Dsui_3444 0.30 +0.5 3,702,654 - Dsui_3444 0.33 -0.8 3,702,677 - Dsui_3444 0.35 -1.8 3,702,775 + Dsui_3444 0.44 -0.0 3,702,781 - Dsui_3444 0.44 -2.8 3,702,783 + Dsui_3444 0.44 +0.6 3,702,783 - Dsui_3444 0.44 +0.2 3,702,961 + Dsui_3444 0.61 +0.5 3,702,980 + Dsui_3444 0.62 +0.2
Or see this region's nucleotide sequence