Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3438 and Dsui_3439 are separated by 145 nucleotides Dsui_3439 and Dsui_3440 are separated by 127 nucleotides Dsui_3440 and Dsui_3441 overlap by 4 nucleotides
Dsui_3438: Dsui_3438 - beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, at 3,693,271 to 3,694,170
_3438
Dsui_3439: Dsui_3439 - methyl-accepting chemotaxis protein, at 3,694,316 to 3,695,965
_3439
Dsui_3440: Dsui_3440 - Protein of unknown function (DUF2892), at 3,696,093 to 3,696,302
_3440
Dsui_3441: Dsui_3441 - cation/multidrug efflux pump, at 3,696,299 to 3,699,550
_3441
Position (kb)
3694
3695
3696 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3693.411 kb on + strand at 3693.541 kb on + strand, within Dsui_3438 at 3693.549 kb on - strand, within Dsui_3438 at 3693.618 kb on + strand at 3693.883 kb on - strand, within Dsui_3438 at 3693.943 kb on + strand, within Dsui_3438 at 3693.981 kb on + strand, within Dsui_3438 at 3694.106 kb on + strand at 3694.124 kb on - strand at 3694.151 kb on - strand at 3694.409 kb on + strand at 3694.504 kb on + strand, within Dsui_3439 at 3694.523 kb on - strand, within Dsui_3439 at 3694.540 kb on + strand, within Dsui_3439 at 3694.853 kb on - strand, within Dsui_3439 at 3694.969 kb on + strand at 3695.060 kb on - strand, within Dsui_3439 at 3695.086 kb on + strand, within Dsui_3439 at 3695.094 kb on - strand, within Dsui_3439 at 3695.119 kb on + strand at 3695.160 kb on - strand, within Dsui_3439 at 3695.221 kb on + strand, within Dsui_3439 at 3695.233 kb on + strand, within Dsui_3439 at 3695.325 kb on - strand, within Dsui_3439 at 3695.611 kb on + strand, within Dsui_3439 at 3695.660 kb on + strand, within Dsui_3439 at 3695.683 kb on - strand, within Dsui_3439 at 3695.684 kb on - strand, within Dsui_3439 at 3695.730 kb on + strand, within Dsui_3439 at 3695.820 kb on - strand at 3695.925 kb on + strand at 3696.036 kb on - strand at 3696.115 kb on + strand at 3696.167 kb on - strand, within Dsui_3440 at 3696.255 kb on - strand, within Dsui_3440 at 3696.298 kb on - strand at 3696.313 kb on + strand at 3696.529 kb on - strand at 3696.559 kb on + strand at 3696.612 kb on - strand at 3696.679 kb on + strand at 3696.716 kb on - strand, within Dsui_3441 at 3696.751 kb on - strand, within Dsui_3441 at 3696.839 kb on - strand, within Dsui_3441 at 3696.885 kb on + strand, within Dsui_3441
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,693,411 + +0.2 3,693,541 + Dsui_3438 0.30 -2.8 3,693,549 - Dsui_3438 0.31 +0.0 3,693,618 + +0.2 3,693,883 - Dsui_3438 0.68 +0.0 3,693,943 + Dsui_3438 0.75 -1.4 3,693,981 + Dsui_3438 0.79 -2.6 3,694,106 + +0.2 3,694,124 - +0.0 3,694,151 - +0.0 3,694,409 + -2.8 3,694,504 + Dsui_3439 0.11 -1.8 3,694,523 - Dsui_3439 0.13 -0.9 3,694,540 + Dsui_3439 0.14 +0.2 3,694,853 - Dsui_3439 0.33 -0.1 3,694,969 + -1.4 3,695,060 - Dsui_3439 0.45 -1.2 3,695,086 + Dsui_3439 0.47 -1.8 3,695,094 - Dsui_3439 0.47 -0.9 3,695,119 + +0.2 3,695,160 - Dsui_3439 0.51 -0.1 3,695,221 + Dsui_3439 0.55 -1.4 3,695,233 + Dsui_3439 0.56 -0.8 3,695,325 - Dsui_3439 0.61 +0.0 3,695,611 + Dsui_3439 0.78 -2.8 3,695,660 + Dsui_3439 0.81 -1.8 3,695,683 - Dsui_3439 0.83 -0.1 3,695,684 - Dsui_3439 0.83 -0.4 3,695,730 + Dsui_3439 0.86 -0.8 3,695,820 - -0.4 3,695,925 + +0.2 3,696,036 - -0.8 3,696,115 + +0.2 3,696,167 - Dsui_3440 0.35 -0.8 3,696,255 - Dsui_3440 0.77 -2.1 3,696,298 - -1.4 3,696,313 + -1.8 3,696,529 - -2.6 3,696,559 + -0.8 3,696,612 - -1.4 3,696,679 + +0.2 3,696,716 - Dsui_3441 0.13 -1.4 3,696,751 - Dsui_3441 0.14 -1.4 3,696,839 - Dsui_3441 0.17 -1.4 3,696,885 + Dsui_3441 0.18 +0.2
Or see this region's nucleotide sequence