Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3288 and Dsui_3289 are separated by 150 nucleotides Dsui_3289 and Dsui_3290 are separated by 57 nucleotides Dsui_3290 and Dsui_3291 overlap by 4 nucleotides Dsui_3291 and Dsui_3292 are separated by 93 nucleotides Dsui_3292 and Dsui_3293 overlap by 62 nucleotides
Dsui_3288: Dsui_3288 - anti-anti-sigma factor, at 3,530,513 to 3,530,824
_3288
Dsui_3289: Dsui_3289 - hypothetical protein, at 3,530,975 to 3,531,568
_3289
Dsui_3290: Dsui_3290 - 4-hydroxybenzoate synthetase (chorismate lyase), at 3,531,626 to 3,532,171
_3290
Dsui_3291: Dsui_3291 - hypothetical protein, at 3,532,168 to 3,532,626
_3291
Dsui_3292: Dsui_3292 - hypothetical protein, at 3,532,720 to 3,532,878
_3292
Dsui_3293: Dsui_3293 - pseudouridine synthase family protein, at 3,532,817 to 3,533,482
_3293
Position (kb)
3531
3532
3533 Strain fitness (log2 ratio)
-2
-1
0
1 at 3530.745 kb on + strand, within Dsui_3288 at 3530.753 kb on - strand, within Dsui_3288 at 3530.753 kb on - strand, within Dsui_3288 at 3530.759 kb on - strand, within Dsui_3288 at 3530.773 kb on - strand, within Dsui_3288 at 3530.776 kb on - strand, within Dsui_3288 at 3530.790 kb on + strand at 3530.798 kb on - strand at 3530.854 kb on + strand at 3530.858 kb on + strand at 3530.900 kb on + strand at 3530.954 kb on - strand at 3530.993 kb on + strand at 3531.030 kb on + strand at 3531.030 kb on + strand at 3531.038 kb on - strand, within Dsui_3289 at 3531.038 kb on - strand, within Dsui_3289 at 3531.174 kb on - strand, within Dsui_3289 at 3531.232 kb on + strand at 3531.280 kb on - strand, within Dsui_3289 at 3531.281 kb on + strand at 3531.330 kb on - strand, within Dsui_3289 at 3531.379 kb on - strand, within Dsui_3289 at 3531.384 kb on - strand, within Dsui_3289 at 3531.595 kb on - strand at 3531.598 kb on + strand at 3531.603 kb on + strand at 3531.650 kb on - strand at 3531.769 kb on + strand at 3531.898 kb on - strand, within Dsui_3290 at 3531.959 kb on - strand, within Dsui_3290 at 3531.984 kb on - strand, within Dsui_3290 at 3531.991 kb on + strand, within Dsui_3290 at 3532.195 kb on - strand at 3532.203 kb on + strand at 3532.203 kb on + strand at 3532.306 kb on - strand, within Dsui_3291 at 3532.484 kb on + strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.527 kb on + strand at 3532.672 kb on - strand at 3532.674 kb on + strand at 3532.682 kb on - strand at 3532.848 kb on + strand at 3532.848 kb on + strand at 3532.856 kb on - strand at 3532.856 kb on - strand at 3533.028 kb on - strand, within Dsui_3293 at 3533.033 kb on - strand, within Dsui_3293 at 3533.128 kb on - strand, within Dsui_3293 at 3533.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,530,745 + Dsui_3288 0.74 -0.7 3,530,753 - Dsui_3288 0.77 +0.6 3,530,753 - Dsui_3288 0.77 -1.7 3,530,759 - Dsui_3288 0.79 +0.2 3,530,773 - Dsui_3288 0.83 -0.2 3,530,776 - Dsui_3288 0.84 +0.0 3,530,790 + +0.3 3,530,798 - +0.1 3,530,854 + -1.7 3,530,858 + -2.0 3,530,900 + -0.7 3,530,954 - +0.1 3,530,993 + -0.7 3,531,030 + -0.7 3,531,030 + -0.7 3,531,038 - Dsui_3289 0.11 -0.7 3,531,038 - Dsui_3289 0.11 -1.3 3,531,174 - Dsui_3289 0.34 +1.1 3,531,232 + +0.3 3,531,280 - Dsui_3289 0.51 -1.1 3,531,281 + -0.7 3,531,330 - Dsui_3289 0.60 -1.5 3,531,379 - Dsui_3289 0.68 -1.1 3,531,384 - Dsui_3289 0.69 +0.1 3,531,595 - -0.3 3,531,598 + +0.3 3,531,603 + +0.3 3,531,650 - +1.3 3,531,769 + -0.7 3,531,898 - Dsui_3290 0.50 -0.2 3,531,959 - Dsui_3290 0.61 +0.6 3,531,984 - Dsui_3290 0.66 +0.9 3,531,991 + Dsui_3290 0.67 -2.3 3,532,195 - +0.3 3,532,203 + +0.3 3,532,203 + -1.3 3,532,306 - Dsui_3291 0.30 +0.0 3,532,484 + Dsui_3291 0.69 +0.3 3,532,492 - Dsui_3291 0.71 +0.2 3,532,492 - Dsui_3291 0.71 +0.1 3,532,527 + +0.3 3,532,672 - +0.1 3,532,674 + +0.3 3,532,682 - +0.1 3,532,848 + +0.3 3,532,848 + +0.3 3,532,856 - +0.4 3,532,856 - +0.0 3,533,028 - Dsui_3293 0.32 -0.1 3,533,033 - Dsui_3293 0.32 -2.3 3,533,128 - Dsui_3293 0.47 -0.7 3,533,169 - +0.3
Or see this region's nucleotide sequence