Strain Fitness in Dechlorosoma suillum PS around Dsui_3250

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3248 and Dsui_3249 are separated by 18 nucleotidesDsui_3249 and Dsui_3250 are separated by 24 nucleotidesDsui_3250 and Dsui_3251 are separated by 214 nucleotides Dsui_3248: Dsui_3248 - argininosuccinate synthase, at 3,488,583 to 3,489,812 _3248 Dsui_3249: Dsui_3249 - ornithine carbamoyltransferase, at 3,489,831 to 3,490,754 _3249 Dsui_3250: Dsui_3250 - acetylornithine/succinylornithine aminotransferase, at 3,490,779 to 3,491,951 _3250 Dsui_3251: Dsui_3251 - ATPase involved in chromosome partitioning, at 3,492,166 to 3,492,930 _3251 Position (kb) 3490 3491 3492Strain fitness (log2 ratio) -2 -1 0 1at 3490.759 kb on - strandat 3490.759 kb on - strandat 3490.766 kb on - strandat 3490.774 kb on - strandat 3490.784 kb on - strandat 3490.794 kb on - strandat 3490.818 kb on - strandat 3490.834 kb on - strandat 3490.834 kb on - strandat 3490.955 kb on - strand, within Dsui_3250at 3490.996 kb on - strand, within Dsui_3250at 3491.046 kb on - strand, within Dsui_3250at 3491.105 kb on - strand, within Dsui_3250at 3491.229 kb on - strand, within Dsui_3250at 3491.229 kb on - strand, within Dsui_3250at 3491.306 kb on - strand, within Dsui_3250at 3491.400 kb on - strand, within Dsui_3250at 3491.406 kb on - strand, within Dsui_3250at 3491.761 kb on - strand, within Dsui_3250at 3491.761 kb on - strand, within Dsui_3250at 3491.812 kb on - strand, within Dsui_3250at 3491.865 kb on - strandat 3491.955 kb on - strandat 3491.966 kb on - strandat 3492.039 kb on + strandat 3492.042 kb on - strandat 3492.042 kb on - strandat 3492.044 kb on + strandat 3492.062 kb on - strandat 3492.087 kb on - strandat 3492.113 kb on + strandat 3492.113 kb on + strandat 3492.118 kb on + strandat 3492.124 kb on + strandat 3492.132 kb on - strandat 3492.149 kb on - strandat 3492.156 kb on + strandat 3492.221 kb on + strandat 3492.229 kb on - strandat 3492.276 kb on + strand, within Dsui_3251at 3492.294 kb on + strand, within Dsui_3251at 3492.347 kb on + strand, within Dsui_3251at 3492.370 kb on - strand, within Dsui_3251at 3492.486 kb on + strand, within Dsui_3251at 3492.706 kb on + strand, within Dsui_3251at 3492.759 kb on + strandat 3492.833 kb on + strand, within Dsui_3251at 3492.833 kb on + strand, within Dsui_3251at 3492.841 kb on - strand, within Dsui_3251at 3492.841 kb on - strand, within Dsui_3251at 3492.847 kb on - strand, within Dsui_3251at 3492.883 kb on - strandat 3492.887 kb on + strandat 3492.890 kb on - strandat 3492.890 kb on - strandat 3492.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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3,490,759 - -1.2
3,490,759 - +0.1
3,490,766 - +0.0
3,490,774 - +0.3
3,490,784 - -0.1
3,490,794 - +0.1
3,490,818 - +0.3
3,490,834 - -0.1
3,490,834 - +0.3
3,490,955 - Dsui_3250 0.15 +0.3
3,490,996 - Dsui_3250 0.18 +0.2
3,491,046 - Dsui_3250 0.23 +0.1
3,491,105 - Dsui_3250 0.28 +0.0
3,491,229 - Dsui_3250 0.38 +0.2
3,491,229 - Dsui_3250 0.38 -0.1
3,491,306 - Dsui_3250 0.45 +0.1
3,491,400 - Dsui_3250 0.53 +0.3
3,491,406 - Dsui_3250 0.53 +0.2
3,491,761 - Dsui_3250 0.84 -0.0
3,491,761 - Dsui_3250 0.84 +0.2
3,491,812 - Dsui_3250 0.88 -1.0
3,491,865 - +0.2
3,491,955 - +0.4
3,491,966 - +0.1
3,492,039 + -1.8
3,492,042 - +0.2
3,492,042 - -0.0
3,492,044 + +0.2
3,492,062 - -0.1
3,492,087 - +0.1
3,492,113 + -0.8
3,492,113 + -0.8
3,492,118 + -1.4
3,492,124 + -0.8
3,492,132 - +0.2
3,492,149 - -1.8
3,492,156 + +0.2
3,492,221 + +0.2
3,492,229 - +0.2
3,492,276 + Dsui_3251 0.14 +0.2
3,492,294 + Dsui_3251 0.17 -2.1
3,492,347 + Dsui_3251 0.24 +0.2
3,492,370 - Dsui_3251 0.27 -0.8
3,492,486 + Dsui_3251 0.42 +0.2
3,492,706 + Dsui_3251 0.71 +0.2
3,492,759 + +0.2
3,492,833 + Dsui_3251 0.87 -0.8
3,492,833 + Dsui_3251 0.87 +0.2
3,492,841 - Dsui_3251 0.88 -1.4
3,492,841 - Dsui_3251 0.88 -0.8
3,492,847 - Dsui_3251 0.89 -0.8
3,492,883 - -1.5
3,492,887 + -1.4
3,492,890 - -2.6
3,492,890 - -1.8
3,492,895 - +0.2

Or see this region's nucleotide sequence