Strain Fitness in Dechlorosoma suillum PS around Dsui_3160

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3159 and Dsui_3160 are separated by 3 nucleotidesDsui_3160 and Dsui_3161 are separated by 11 nucleotides Dsui_3159: Dsui_3159 - PAS domain S-box, at 3,383,458 to 3,385,446 _3159 Dsui_3160: Dsui_3160 - response regulator, at 3,385,450 to 3,386,052 _3160 Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986 _3161 Position (kb) 3385 3386 3387Strain fitness (log2 ratio) -2 -1 0 1at 3384.507 kb on - strand, within Dsui_3159at 3384.538 kb on - strand, within Dsui_3159at 3384.577 kb on - strand, within Dsui_3159at 3384.681 kb on - strand, within Dsui_3159at 3384.715 kb on + strand, within Dsui_3159at 3384.914 kb on - strand, within Dsui_3159at 3385.055 kb on + strand, within Dsui_3159at 3385.081 kb on + strand, within Dsui_3159at 3385.095 kb on + strand, within Dsui_3159at 3385.181 kb on + strand, within Dsui_3159at 3385.234 kb on + strand, within Dsui_3159at 3385.247 kb on - strand, within Dsui_3159at 3385.330 kb on - strandat 3385.330 kb on - strandat 3385.377 kb on + strandat 3385.440 kb on + strandat 3385.567 kb on - strand, within Dsui_3160at 3385.608 kb on + strand, within Dsui_3160at 3385.640 kb on + strand, within Dsui_3160at 3385.640 kb on + strand, within Dsui_3160at 3385.648 kb on - strand, within Dsui_3160at 3385.648 kb on - strand, within Dsui_3160at 3385.648 kb on - strand, within Dsui_3160at 3385.648 kb on - strand, within Dsui_3160at 3385.673 kb on - strand, within Dsui_3160at 3385.680 kb on - strand, within Dsui_3160at 3385.716 kb on + strand, within Dsui_3160at 3385.768 kb on + strand, within Dsui_3160at 3385.883 kb on + strand, within Dsui_3160at 3385.993 kb on - strandat 3386.032 kb on + strandat 3386.054 kb on - strandat 3386.131 kb on + strandat 3386.204 kb on - strandat 3386.234 kb on - strandat 3386.261 kb on + strand, within Dsui_3161at 3386.445 kb on - strand, within Dsui_3161at 3386.453 kb on + strand, within Dsui_3161at 3386.536 kb on + strand, within Dsui_3161at 3386.680 kb on - strandat 3386.777 kb on - strand, within Dsui_3161at 3386.830 kb on + strand, within Dsui_3161

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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3,384,507 - Dsui_3159 0.53 +0.1
3,384,538 - Dsui_3159 0.54 +0.1
3,384,577 - Dsui_3159 0.56 +0.1
3,384,681 - Dsui_3159 0.61 +0.1
3,384,715 + Dsui_3159 0.63 +0.5
3,384,914 - Dsui_3159 0.73 -0.9
3,385,055 + Dsui_3159 0.80 +0.1
3,385,081 + Dsui_3159 0.82 +0.4
3,385,095 + Dsui_3159 0.82 -0.6
3,385,181 + Dsui_3159 0.87 -0.6
3,385,234 + Dsui_3159 0.89 +0.3
3,385,247 - Dsui_3159 0.90 +0.1
3,385,330 - -2.5
3,385,330 - +0.1
3,385,377 + -0.2
3,385,440 + -0.2
3,385,567 - Dsui_3160 0.19 -1.9
3,385,608 + Dsui_3160 0.26 -0.0
3,385,640 + Dsui_3160 0.32 -0.1
3,385,640 + Dsui_3160 0.32 -0.2
3,385,648 - Dsui_3160 0.33 -1.5
3,385,648 - Dsui_3160 0.33 -2.7
3,385,648 - Dsui_3160 0.33 +0.1
3,385,648 - Dsui_3160 0.33 -0.9
3,385,673 - Dsui_3160 0.37 -0.9
3,385,680 - Dsui_3160 0.38 -1.5
3,385,716 + Dsui_3160 0.44 -0.4
3,385,768 + Dsui_3160 0.53 -0.0
3,385,883 + Dsui_3160 0.72 +0.7
3,385,993 - -1.5
3,386,032 + -1.7
3,386,054 - +0.1
3,386,131 + -1.7
3,386,204 - +0.1
3,386,234 - -2.2
3,386,261 + Dsui_3161 0.10 +0.0
3,386,445 - Dsui_3161 0.20 -0.9
3,386,453 + Dsui_3161 0.20 +1.1
3,386,536 + Dsui_3161 0.25 -1.9
3,386,680 - +0.1
3,386,777 - Dsui_3161 0.37 -0.9
3,386,830 + Dsui_3161 0.40 -2.5

Or see this region's nucleotide sequence