Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3115 and Dsui_3116 overlap by 1 nucleotides Dsui_3116 and Dsui_3117 are separated by 9 nucleotides Dsui_3117 and Dsui_3118 are separated by 22 nucleotides
Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169
_3115
Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960
_3116
Dsui_3117: Dsui_3117 - hypothetical protein, at 3,338,970 to 3,339,374
_3117
Dsui_3118: Dsui_3118 - polyferredoxin, at 3,339,397 to 3,340,389
_3118
Position (kb)
3338
3339
3340 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3338.083 kb on + strand, within Dsui_3115 at 3338.099 kb on + strand at 3338.469 kb on - strand at 3338.760 kb on + strand at 3338.975 kb on - strand at 3338.975 kb on - strand at 3339.046 kb on - strand, within Dsui_3117 at 3339.066 kb on + strand, within Dsui_3117 at 3339.066 kb on + strand, within Dsui_3117 at 3339.081 kb on + strand, within Dsui_3117 at 3339.184 kb on + strand, within Dsui_3117 at 3339.352 kb on + strand at 3339.491 kb on + strand at 3339.597 kb on + strand, within Dsui_3118 at 3339.605 kb on - strand at 3339.654 kb on + strand, within Dsui_3118 at 3339.746 kb on + strand at 3339.944 kb on + strand, within Dsui_3118 at 3339.951 kb on + strand, within Dsui_3118 at 3340.107 kb on - strand at 3340.125 kb on + strand at 3340.200 kb on + strand, within Dsui_3118 at 3340.223 kb on - strand at 3340.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,338,083 + Dsui_3115 0.72 -1.9 3,338,099 + +0.1 3,338,469 - -0.9 3,338,760 + +0.1 3,338,975 - -1.5 3,338,975 - +0.1 3,339,046 - Dsui_3117 0.19 -2.9 3,339,066 + Dsui_3117 0.24 +0.1 3,339,066 + Dsui_3117 0.24 -1.9 3,339,081 + Dsui_3117 0.27 -2.2 3,339,184 + Dsui_3117 0.53 +0.1 3,339,352 + -0.9 3,339,491 + +0.1 3,339,597 + Dsui_3118 0.20 -0.9 3,339,605 - +0.1 3,339,654 + Dsui_3118 0.26 -0.9 3,339,746 + +0.1 3,339,944 + Dsui_3118 0.55 +0.1 3,339,951 + Dsui_3118 0.56 -1.5 3,340,107 - +0.1 3,340,125 + +0.1 3,340,200 + Dsui_3118 0.81 -2.2 3,340,223 - -0.9 3,340,334 + +0.1
Or see this region's nucleotide sequence