Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3097 and Dsui_3098 overlap by 4 nucleotides Dsui_3098 and Dsui_3099 overlap by 4 nucleotides Dsui_3099 and Dsui_3100 are separated by 7 nucleotides
Dsui_3097: Dsui_3097 - O-6-methylguanine DNA methyltransferase, at 3,315,329 to 3,316,552
_3097
Dsui_3098: Dsui_3098 - alkylated DNA repair protein, at 3,316,549 to 3,317,211
_3098
Dsui_3099: Dsui_3099 - 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase, at 3,317,208 to 3,318,188
_3099
Dsui_3100: Dsui_3100 - putative permease, at 3,318,196 to 3,319,125
_3100
Position (kb)
3317
3318
3319 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3316.342 kb on + strand, within Dsui_3097 at 3316.342 kb on + strand, within Dsui_3097 at 3316.350 kb on - strand, within Dsui_3097 at 3316.350 kb on - strand, within Dsui_3097 at 3316.350 kb on - strand at 3316.350 kb on - strand at 3316.529 kb on + strand at 3316.534 kb on + strand at 3316.534 kb on + strand at 3316.542 kb on - strand at 3316.554 kb on - strand at 3316.601 kb on - strand at 3316.726 kb on + strand at 3316.847 kb on - strand, within Dsui_3098 at 3317.183 kb on + strand at 3317.362 kb on + strand at 3317.417 kb on + strand at 3317.425 kb on - strand at 3317.429 kb on + strand, within Dsui_3099 at 3317.443 kb on + strand at 3317.566 kb on + strand, within Dsui_3099 at 3317.690 kb on - strand at 3317.690 kb on - strand at 3317.695 kb on - strand at 3317.789 kb on + strand, within Dsui_3099 at 3317.974 kb on + strand, within Dsui_3099 at 3317.993 kb on + strand, within Dsui_3099 at 3318.063 kb on + strand, within Dsui_3099 at 3318.210 kb on + strand at 3318.210 kb on + strand at 3318.218 kb on - strand at 3318.218 kb on - strand at 3318.724 kb on + strand at 3319.004 kb on - strand at 3319.047 kb on + strand at 3319.166 kb on + strand at 3319.166 kb on + strand at 3319.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,316,342 + Dsui_3097 0.83 +0.1 3,316,342 + Dsui_3097 0.83 +0.2 3,316,350 - Dsui_3097 0.83 -3.0 3,316,350 - Dsui_3097 0.83 -1.4 3,316,350 - -2.4 3,316,350 - +0.2 3,316,529 + -2.2 3,316,534 + -0.8 3,316,534 + -1.8 3,316,542 - +0.2 3,316,554 - -1.4 3,316,601 - -1.8 3,316,726 + +0.2 3,316,847 - Dsui_3098 0.45 -1.8 3,317,183 + -1.4 3,317,362 + +0.2 3,317,417 + +0.2 3,317,425 - -1.4 3,317,429 + Dsui_3099 0.23 -2.2 3,317,443 + -0.8 3,317,566 + Dsui_3099 0.36 -0.8 3,317,690 - +0.2 3,317,690 - -2.4 3,317,695 - -1.4 3,317,789 + Dsui_3099 0.59 -1.8 3,317,974 + Dsui_3099 0.78 -3.2 3,317,993 + Dsui_3099 0.80 -2.2 3,318,063 + Dsui_3099 0.87 -1.2 3,318,210 + -1.4 3,318,210 + -0.8 3,318,218 - -0.8 3,318,218 - -1.4 3,318,724 + +0.2 3,319,004 - -0.8 3,319,047 + +0.2 3,319,166 + -1.4 3,319,166 + -0.8 3,319,166 + -0.8
Or see this region's nucleotide sequence