Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3093 and Dsui_3094 are separated by 136 nucleotides Dsui_3094 and Dsui_3095 are separated by 82 nucleotides Dsui_3095 and Dsui_3096 are separated by 121 nucleotides
Dsui_3093: Dsui_3093 - hypothetical protein, at 3,312,025 to 3,312,339
_3093
Dsui_3094: Dsui_3094 - putative HD superfamily hydrolase, at 3,312,476 to 3,313,132
_3094
Dsui_3095: Dsui_3095 - Protein of unknown function (DUF2726), at 3,313,215 to 3,313,691
_3095
Dsui_3096: Dsui_3096 - NADH dehydrogenase, FAD-containing subunit, at 3,313,813 to 3,315,132
_3096
Position (kb)
3313
3314 Strain fitness (log2 ratio)
-2
-1
0
1 at 3312.248 kb on + strand at 3312.276 kb on - strand at 3312.379 kb on - strand at 3312.400 kb on - strand at 3312.450 kb on - strand at 3312.624 kb on + strand at 3312.682 kb on + strand at 3312.683 kb on + strand, within Dsui_3094 at 3312.685 kb on - strand, within Dsui_3094 at 3312.685 kb on - strand, within Dsui_3094 at 3312.705 kb on + strand, within Dsui_3094 at 3312.705 kb on + strand at 3312.719 kb on + strand, within Dsui_3094 at 3312.727 kb on - strand, within Dsui_3094 at 3312.749 kb on - strand, within Dsui_3094 at 3312.932 kb on - strand, within Dsui_3094 at 3313.001 kb on + strand, within Dsui_3094 at 3313.085 kb on + strand at 3313.150 kb on - strand at 3313.150 kb on - strand at 3313.164 kb on + strand at 3313.222 kb on + strand at 3313.304 kb on + strand at 3313.391 kb on - strand at 3313.484 kb on - strand, within Dsui_3095 at 3313.502 kb on + strand, within Dsui_3095 at 3313.563 kb on - strand, within Dsui_3095 at 3313.563 kb on - strand, within Dsui_3095 at 3313.563 kb on - strand, within Dsui_3095 at 3313.574 kb on - strand, within Dsui_3095 at 3313.700 kb on + strand at 3313.848 kb on + strand at 3313.856 kb on - strand at 3313.919 kb on - strand at 3313.969 kb on - strand, within Dsui_3096 at 3314.090 kb on + strand at 3314.229 kb on - strand, within Dsui_3096 at 3314.297 kb on + strand at 3314.357 kb on + strand at 3314.415 kb on - strand at 3314.428 kb on - strand at 3314.502 kb on - strand at 3314.519 kb on - strand, within Dsui_3096 at 3314.520 kb on - strand, within Dsui_3096 at 3314.533 kb on + strand at 3314.652 kb on - strand, within Dsui_3096 at 3314.658 kb on - strand, within Dsui_3096
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,312,248 + +0.2 3,312,276 - -0.8 3,312,379 - +0.2 3,312,400 - -1.8 3,312,450 - -1.8 3,312,624 + +0.2 3,312,682 + -0.8 3,312,683 + Dsui_3094 0.32 -1.4 3,312,685 - Dsui_3094 0.32 +0.2 3,312,685 - Dsui_3094 0.32 -2.4 3,312,705 + Dsui_3094 0.35 +0.2 3,312,705 + +0.2 3,312,719 + Dsui_3094 0.37 -1.4 3,312,727 - Dsui_3094 0.38 -2.4 3,312,749 - Dsui_3094 0.42 -1.4 3,312,932 - Dsui_3094 0.69 -0.8 3,313,001 + Dsui_3094 0.80 -0.8 3,313,085 + -0.8 3,313,150 - -2.4 3,313,150 - -0.8 3,313,164 + -0.8 3,313,222 + +0.2 3,313,304 + +0.2 3,313,391 - +0.2 3,313,484 - Dsui_3095 0.56 +0.2 3,313,502 + Dsui_3095 0.60 -1.8 3,313,563 - Dsui_3095 0.73 +0.2 3,313,563 - Dsui_3095 0.73 -0.8 3,313,563 - Dsui_3095 0.73 -1.8 3,313,574 - Dsui_3095 0.75 -1.8 3,313,700 + +0.2 3,313,848 + +0.2 3,313,856 - -0.8 3,313,919 - +0.2 3,313,969 - Dsui_3096 0.12 -2.2 3,314,090 + -1.4 3,314,229 - Dsui_3096 0.32 -0.8 3,314,297 + +0.2 3,314,357 + +0.2 3,314,415 - +0.2 3,314,428 - +0.2 3,314,502 - +0.2 3,314,519 - Dsui_3096 0.53 -1.4 3,314,520 - Dsui_3096 0.54 -0.8 3,314,533 + -0.8 3,314,652 - Dsui_3096 0.64 -2.4 3,314,658 - Dsui_3096 0.64 -0.8
Or see this region's nucleotide sequence