Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2954 and Dsui_2955 are separated by 803 nucleotides Dsui_2955 and Dsui_2956 overlap by 4 nucleotides Dsui_2956 and Dsui_2957 overlap by 7 nucleotides
Dsui_2954: Dsui_2954 - acyl-CoA hydrolase, at 3,162,961 to 3,163,830
_2954
Dsui_2955: Dsui_2955 - cobalamin biosynthesis protein CbiM, at 3,164,634 to 3,165,311
_2955
Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679
_2956
Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404
_2957
Position (kb)
3164
3165
3166 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3163.947 kb on - strand at 3163.986 kb on - strand at 3164.011 kb on - strand at 3164.216 kb on - strand at 3164.318 kb on - strand at 3164.330 kb on - strand at 3164.362 kb on + strand at 3164.362 kb on + strand at 3164.370 kb on - strand at 3164.419 kb on - strand at 3164.454 kb on + strand at 3164.625 kb on - strand at 3164.639 kb on + strand at 3164.790 kb on - strand at 3165.119 kb on + strand, within Dsui_2955 at 3165.119 kb on + strand, within Dsui_2955 at 3165.240 kb on + strand, within Dsui_2955 at 3165.259 kb on + strand at 3165.367 kb on - strand, within Dsui_2956 at 3165.575 kb on + strand, within Dsui_2956 at 3165.650 kb on + strand at 3166.105 kb on - strand, within Dsui_2957 at 3166.105 kb on - strand at 3166.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,163,947 - +0.3 3,163,986 - +0.1 3,164,011 - -0.0 3,164,216 - -0.3 3,164,318 - -1.7 3,164,330 - +0.3 3,164,362 + +0.2 3,164,362 + +0.2 3,164,370 - -3.0 3,164,419 - -2.0 3,164,454 + +0.1 3,164,625 - +0.3 3,164,639 + +0.1 3,164,790 - +0.3 3,165,119 + Dsui_2955 0.72 +0.4 3,165,119 + Dsui_2955 0.72 +0.5 3,165,240 + Dsui_2955 0.89 +0.6 3,165,259 + +0.3 3,165,367 - Dsui_2956 0.16 -1.3 3,165,575 + Dsui_2956 0.72 -0.0 3,165,650 + +0.3 3,166,105 - Dsui_2957 0.59 -2.1 3,166,105 - +0.3 3,166,154 - +0.3
Or see this region's nucleotide sequence