Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2885 and Dsui_2886 are separated by 226 nucleotides Dsui_2886 and Dsui_2887 overlap by 1 nucleotides Dsui_2887 and Dsui_2888 overlap by 4 nucleotides Dsui_2888 and Dsui_2889 are separated by 42 nucleotides
Dsui_2885: Dsui_2885 - PAS domain S-box, at 3,080,798 to 3,083,941
_2885
Dsui_2886: Dsui_2886 - intracellular septation protein A, at 3,084,168 to 3,084,707
_2886
Dsui_2887: Dsui_2887 - hypothetical protein, at 3,084,707 to 3,085,009
_2887
Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278
_2888
Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121
_2889
Position (kb)
3084
3085
3086 Strain fitness (log2 ratio)
-2
-1
0
1 at 3083.957 kb on - strand at 3084.040 kb on - strand at 3084.664 kb on + strand at 3084.820 kb on - strand at 3084.829 kb on + strand, within Dsui_2887 at 3084.906 kb on + strand, within Dsui_2887 at 3084.907 kb on + strand, within Dsui_2887 at 3084.970 kb on + strand, within Dsui_2887 at 3085.133 kb on + strand, within Dsui_2888 at 3085.141 kb on - strand, within Dsui_2888 at 3085.161 kb on - strand, within Dsui_2888 at 3085.269 kb on - strand at 3085.305 kb on + strand at 3085.373 kb on - strand at 3085.478 kb on + strand, within Dsui_2889 at 3085.630 kb on + strand, within Dsui_2889 at 3085.718 kb on - strand, within Dsui_2889 at 3085.745 kb on - strand at 3085.826 kb on + strand, within Dsui_2889 at 3085.870 kb on + strand, within Dsui_2889
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 3,083,957 - +0.3 3,084,040 - -1.3 3,084,664 + -0.5 3,084,820 - +0.3 3,084,829 + Dsui_2887 0.40 +0.3 3,084,906 + Dsui_2887 0.66 +0.2 3,084,907 + Dsui_2887 0.66 +0.5 3,084,970 + Dsui_2887 0.87 -0.6 3,085,133 + Dsui_2888 0.47 +0.4 3,085,141 - Dsui_2888 0.49 -0.7 3,085,161 - Dsui_2888 0.57 -2.0 3,085,269 - +0.3 3,085,305 + +0.1 3,085,373 - -0.7 3,085,478 + Dsui_2889 0.20 +0.1 3,085,630 + Dsui_2889 0.39 +0.1 3,085,718 - Dsui_2889 0.50 +0.3 3,085,745 - -0.7 3,085,826 + Dsui_2889 0.63 -0.0 3,085,870 + Dsui_2889 0.69 -0.3
Or see this region's nucleotide sequence