Strain Fitness in Dechlorosoma suillum PS around Dsui_2744

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2743 and Dsui_2744 are separated by 135 nucleotidesDsui_2744 and Dsui_2745 are separated by 97 nucleotides Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619 _2743 Dsui_2744: Dsui_2744 - Protein of unknown function (DUF1236), at 2,898,755 to 2,899,300 _2744 Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026 _2745 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -1 0 1at 2897.814 kb on + strandat 2897.873 kb on + strandat 2898.269 kb on - strandat 2898.446 kb on + strandat 2898.582 kb on + strandat 2898.621 kb on - strandat 2898.728 kb on + strandat 2898.728 kb on + strandat 2898.801 kb on + strandat 2898.801 kb on + strandat 2898.883 kb on + strand, within Dsui_2744at 2898.904 kb on - strandat 2899.163 kb on - strand, within Dsui_2744at 2899.210 kb on - strandat 2899.230 kb on + strand, within Dsui_2744at 2899.260 kb on + strandat 2899.445 kb on + strandat 2899.627 kb on - strand, within Dsui_2745at 2900.133 kb on + strand, within Dsui_2745at 2900.149 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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2,897,814 + -1.2
2,897,873 + +0.4
2,898,269 - +0.4
2,898,446 + +0.4
2,898,582 + -0.6
2,898,621 - +0.4
2,898,728 + -0.2
2,898,728 + -0.6
2,898,801 + -0.6
2,898,801 + +0.2
2,898,883 + Dsui_2744 0.23 +1.0
2,898,904 - +0.4
2,899,163 - Dsui_2744 0.75 +0.4
2,899,210 - -0.6
2,899,230 + Dsui_2744 0.87 -0.5
2,899,260 + -0.0
2,899,445 + +0.4
2,899,627 - Dsui_2745 0.14 -1.6
2,900,133 + Dsui_2745 0.45 +0.2
2,900,149 + +0.4

Or see this region's nucleotide sequence