Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2673 and Dsui_2674 overlap by 8 nucleotides Dsui_2674 and Dsui_2675 are separated by 60 nucleotides Dsui_2675 and Dsui_2676 overlap by 1 nucleotides Dsui_2676 and Dsui_2677 are separated by 199 nucleotides
Dsui_2673: Dsui_2673 - hypothetical protein, at 2,826,147 to 2,826,470
_2673
Dsui_2674: Dsui_2674 - oligoketide cyclase/lipid transport protein, at 2,826,463 to 2,826,894
_2674
Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401
_2675
Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021
_2676
Dsui_2677: Dsui_2677 - phosphoenolpyruvate synthase, at 2,828,221 to 2,830,596
_2677
Position (kb)
2827
2828
2829 Strain fitness (log2 ratio)
-2
-1
0
1 at 2826.409 kb on - strand, within Dsui_2673 at 2826.897 kb on - strand at 2826.897 kb on - strand at 2826.980 kb on - strand at 2827.403 kb on - strand at 2827.426 kb on - strand at 2827.429 kb on - strand at 2827.439 kb on - strand at 2827.530 kb on + strand, within Dsui_2676 at 2827.598 kb on - strand, within Dsui_2676 at 2827.612 kb on - strand, within Dsui_2676 at 2827.995 kb on - strand at 2828.010 kb on + strand at 2828.018 kb on - strand at 2828.076 kb on + strand at 2828.125 kb on + strand at 2828.133 kb on - strand at 2828.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,826,409 - Dsui_2673 0.81 -0.1 2,826,897 - -0.1 2,826,897 - -0.3 2,826,980 - +0.4 2,827,403 - +0.4 2,827,426 - +0.4 2,827,429 - +0.4 2,827,439 - -0.6 2,827,530 + Dsui_2676 0.21 +1.0 2,827,598 - Dsui_2676 0.32 +0.4 2,827,612 - Dsui_2676 0.34 -1.9 2,827,995 - +0.4 2,828,010 + -1.3 2,828,018 - -0.6 2,828,076 + -0.6 2,828,125 + -1.6 2,828,133 - +0.4 2,828,191 + -1.6
Or see this region's nucleotide sequence