Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2637 and Dsui_2638 are separated by 80 nucleotides Dsui_2638 and Dsui_2639 are separated by 21 nucleotides Dsui_2639 and Dsui_2640 are separated by 96 nucleotides Dsui_2640 and Dsui_2641 are separated by 29 nucleotides
Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084
_2637
Dsui_2638: Dsui_2638 - hypothetical protein, at 2,791,165 to 2,791,509
_2638
Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971
_2639
Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730
_2640
Dsui_2641: Dsui_2641 - putative multicopper oxidase, at 2,792,760 to 2,794,169
_2641
Position (kb)
2792
2793 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2791.135 kb on + strand at 2791.143 kb on + strand at 2791.151 kb on - strand at 2791.210 kb on - strand, within Dsui_2638 at 2791.306 kb on + strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.439 kb on + strand, within Dsui_2638 at 2791.460 kb on + strand, within Dsui_2638 at 2791.503 kb on - strand at 2791.546 kb on + strand at 2791.564 kb on + strand at 2791.604 kb on - strand, within Dsui_2639 at 2791.662 kb on - strand, within Dsui_2639 at 2791.728 kb on + strand, within Dsui_2639 at 2791.773 kb on - strand, within Dsui_2639 at 2791.801 kb on - strand, within Dsui_2639 at 2791.884 kb on - strand, within Dsui_2639 at 2791.928 kb on - strand at 2791.958 kb on - strand at 2791.998 kb on - strand at 2792.011 kb on - strand at 2792.065 kb on + strand at 2792.065 kb on + strand at 2792.073 kb on - strand at 2792.088 kb on + strand at 2792.096 kb on - strand at 2792.096 kb on - strand at 2792.103 kb on - strand at 2792.240 kb on + strand, within Dsui_2640 at 2792.256 kb on - strand, within Dsui_2640 at 2792.320 kb on + strand, within Dsui_2640 at 2792.431 kb on - strand, within Dsui_2640 at 2792.436 kb on - strand, within Dsui_2640 at 2792.510 kb on - strand, within Dsui_2640 at 2792.708 kb on + strand at 2792.754 kb on - strand at 2793.016 kb on - strand, within Dsui_2641 at 2793.017 kb on - strand, within Dsui_2641 at 2793.072 kb on + strand, within Dsui_2641 at 2793.103 kb on - strand, within Dsui_2641 at 2793.114 kb on - strand, within Dsui_2641 at 2793.175 kb on + strand, within Dsui_2641 at 2793.473 kb on + strand, within Dsui_2641 at 2793.490 kb on + strand, within Dsui_2641 at 2793.497 kb on + strand, within Dsui_2641 at 2793.497 kb on + strand, within Dsui_2641 at 2793.505 kb on - strand, within Dsui_2641 at 2793.539 kb on + strand, within Dsui_2641
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,791,135 + +0.4 2,791,143 + -0.6 2,791,151 - +0.4 2,791,210 - Dsui_2638 0.13 +0.4 2,791,306 + Dsui_2638 0.41 -0.6 2,791,369 - Dsui_2638 0.59 -1.2 2,791,369 - Dsui_2638 0.59 -1.2 2,791,439 + Dsui_2638 0.79 -0.6 2,791,460 + Dsui_2638 0.86 -0.6 2,791,503 - -3.4 2,791,546 + -1.6 2,791,564 + -0.6 2,791,604 - Dsui_2639 0.17 -1.2 2,791,662 - Dsui_2639 0.30 +0.4 2,791,728 + Dsui_2639 0.45 -1.2 2,791,773 - Dsui_2639 0.55 +0.4 2,791,801 - Dsui_2639 0.61 +0.4 2,791,884 - Dsui_2639 0.80 +0.4 2,791,928 - -0.6 2,791,958 - +0.4 2,791,998 - -1.2 2,792,011 - +0.4 2,792,065 + +0.4 2,792,065 + +1.0 2,792,073 - +0.4 2,792,088 + +0.4 2,792,096 - -2.0 2,792,096 - +0.4 2,792,103 - +0.4 2,792,240 + Dsui_2640 0.26 +0.4 2,792,256 - Dsui_2640 0.28 +0.4 2,792,320 + Dsui_2640 0.38 -1.2 2,792,431 - Dsui_2640 0.55 +0.4 2,792,436 - Dsui_2640 0.56 -1.2 2,792,510 - Dsui_2640 0.67 -0.6 2,792,708 + -1.2 2,792,754 - +0.4 2,793,016 - Dsui_2641 0.18 -0.6 2,793,017 - Dsui_2641 0.18 -1.2 2,793,072 + Dsui_2641 0.22 -0.6 2,793,103 - Dsui_2641 0.24 -0.6 2,793,114 - Dsui_2641 0.25 -1.2 2,793,175 + Dsui_2641 0.29 +0.4 2,793,473 + Dsui_2641 0.51 +0.4 2,793,490 + Dsui_2641 0.52 +0.4 2,793,497 + Dsui_2641 0.52 +0.4 2,793,497 + Dsui_2641 0.52 -0.6 2,793,505 - Dsui_2641 0.53 +0.4 2,793,539 + Dsui_2641 0.55 +0.4
Or see this region's nucleotide sequence