Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2629 and Dsui_2630 overlap by 4 nucleotides Dsui_2630 and Dsui_2631 are separated by 8 nucleotides Dsui_2631 and Dsui_2632 are separated by 44 nucleotides Dsui_2632 and Dsui_2633 are separated by 76 nucleotides
Dsui_2629: Dsui_2629 - HD-GYP domain-containing protein, at 2,781,200 to 2,782,510
_2629
Dsui_2630: Dsui_2630 - flagellar basal-body rod protein FlgB, at 2,782,507 to 2,783,145
_2630
Dsui_2631: Dsui_2631 - hypothetical protein, at 2,783,154 to 2,783,396
_2631
Dsui_2632: Dsui_2632 - hypothetical protein, at 2,783,441 to 2,783,689
_2632
Dsui_2633: Dsui_2633 - hypothetical protein, at 2,783,766 to 2,784,023
_2633
Position (kb)
2783
2784 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2782.167 kb on - strand, within Dsui_2629 at 2782.294 kb on - strand, within Dsui_2629 at 2782.302 kb on - strand, within Dsui_2629 at 2782.310 kb on - strand, within Dsui_2629 at 2782.323 kb on - strand, within Dsui_2629 at 2782.365 kb on + strand, within Dsui_2629 at 2782.378 kb on - strand, within Dsui_2629 at 2782.383 kb on - strand at 2782.485 kb on - strand at 2782.495 kb on + strand at 2782.496 kb on + strand at 2782.503 kb on - strand at 2782.503 kb on - strand at 2782.503 kb on - strand at 2782.503 kb on - strand at 2782.511 kb on + strand at 2782.537 kb on - strand at 2782.656 kb on + strand, within Dsui_2630 at 2782.694 kb on + strand, within Dsui_2630 at 2782.702 kb on - strand, within Dsui_2630 at 2782.888 kb on + strand, within Dsui_2630 at 2783.061 kb on + strand, within Dsui_2630 at 2783.061 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.074 kb on + strand, within Dsui_2630 at 2783.084 kb on - strand at 2783.086 kb on + strand at 2783.106 kb on - strand at 2783.129 kb on + strand at 2783.184 kb on - strand, within Dsui_2631 at 2783.184 kb on - strand, within Dsui_2631 at 2783.329 kb on - strand, within Dsui_2631 at 2783.380 kb on + strand at 2783.426 kb on - strand at 2783.461 kb on + strand at 2783.480 kb on - strand, within Dsui_2632 at 2783.480 kb on - strand, within Dsui_2632 at 2783.705 kb on + strand at 2783.705 kb on + strand at 2783.708 kb on - strand at 2783.852 kb on - strand, within Dsui_2633 at 2783.872 kb on + strand, within Dsui_2633 at 2783.904 kb on + strand, within Dsui_2633 at 2783.967 kb on + strand, within Dsui_2633 at 2783.975 kb on - strand, within Dsui_2633 at 2783.975 kb on - strand, within Dsui_2633 at 2783.976 kb on - strand, within Dsui_2633 at 2783.987 kb on + strand, within Dsui_2633 at 2784.000 kb on + strand at 2784.055 kb on - strand at 2784.071 kb on + strand at 2784.084 kb on - strand at 2784.092 kb on + strand at 2784.100 kb on - strand at 2784.100 kb on - strand at 2784.144 kb on + strand at 2784.157 kb on - strand at 2784.159 kb on + strand at 2784.159 kb on + strand at 2784.215 kb on - strand at 2784.217 kb on - strand at 2784.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,782,167 - Dsui_2629 0.74 +0.3 2,782,294 - Dsui_2629 0.83 +0.3 2,782,302 - Dsui_2629 0.84 +0.3 2,782,310 - Dsui_2629 0.85 +0.3 2,782,323 - Dsui_2629 0.86 -2.2 2,782,365 + Dsui_2629 0.89 +0.3 2,782,378 - Dsui_2629 0.90 +0.3 2,782,383 - -1.2 2,782,485 - +0.3 2,782,495 + +0.3 2,782,496 + -0.7 2,782,503 - -2.2 2,782,503 - +0.3 2,782,503 - -1.2 2,782,503 - +0.3 2,782,511 + -1.2 2,782,537 - +0.3 2,782,656 + Dsui_2630 0.23 +0.3 2,782,694 + Dsui_2630 0.29 -2.0 2,782,702 - Dsui_2630 0.31 +0.3 2,782,888 + Dsui_2630 0.60 -0.7 2,783,061 + Dsui_2630 0.87 +0.4 2,783,061 + Dsui_2630 0.87 -1.6 2,783,066 + Dsui_2630 0.87 -0.6 2,783,066 + Dsui_2630 0.87 -1.6 2,783,066 + Dsui_2630 0.87 -0.6 2,783,066 + Dsui_2630 0.87 +0.4 2,783,074 + Dsui_2630 0.89 -0.6 2,783,084 - +0.4 2,783,086 + +0.4 2,783,106 - +0.4 2,783,129 + +0.4 2,783,184 - Dsui_2631 0.12 +0.4 2,783,184 - Dsui_2631 0.12 +0.4 2,783,329 - Dsui_2631 0.72 -1.6 2,783,380 + +0.4 2,783,426 - -1.2 2,783,461 + -0.6 2,783,480 - Dsui_2632 0.16 -1.6 2,783,480 - Dsui_2632 0.16 -0.6 2,783,705 + -0.6 2,783,705 + -1.2 2,783,708 - -2.8 2,783,852 - Dsui_2633 0.33 +0.4 2,783,872 + Dsui_2633 0.41 -0.6 2,783,904 + Dsui_2633 0.53 -1.2 2,783,967 + Dsui_2633 0.78 -2.0 2,783,975 - Dsui_2633 0.81 +0.4 2,783,975 - Dsui_2633 0.81 +0.4 2,783,976 - Dsui_2633 0.81 +0.4 2,783,987 + Dsui_2633 0.86 -1.6 2,784,000 + -1.2 2,784,055 - +0.4 2,784,071 + +0.4 2,784,084 - +0.4 2,784,092 + -2.0 2,784,100 - +0.4 2,784,100 - +0.4 2,784,144 + -1.6 2,784,157 - +0.4 2,784,159 + +0.4 2,784,159 + +0.4 2,784,215 - -0.6 2,784,217 - -0.6 2,784,359 + -1.2
Or see this region's nucleotide sequence