Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2595 and Dsui_2596 are separated by 60 nucleotides Dsui_2596 and Dsui_2597 are separated by 32 nucleotides
Dsui_2595: Dsui_2595 - type II secretory pathway, pseudopilin PulG, at 2,750,273 to 2,751,646
_2595
Dsui_2596: Dsui_2596 - methyltransferase family protein, at 2,751,707 to 2,752,408
_2596
Dsui_2597: Dsui_2597 - tyrosine recombinase XerD, at 2,752,441 to 2,753,355
_2597
Position (kb)
2751
2752
2753 Strain fitness (log2 ratio)
-2
-1
0
1 at 2750.772 kb on - strand, within Dsui_2595 at 2750.885 kb on - strand, within Dsui_2595 at 2750.887 kb on + strand, within Dsui_2595 at 2750.900 kb on - strand, within Dsui_2595 at 2751.001 kb on + strand, within Dsui_2595 at 2751.144 kb on - strand, within Dsui_2595 at 2751.171 kb on + strand, within Dsui_2595 at 2751.179 kb on - strand, within Dsui_2595 at 2751.205 kb on - strand, within Dsui_2595 at 2751.272 kb on + strand, within Dsui_2595 at 2751.332 kb on + strand, within Dsui_2595 at 2751.333 kb on + strand, within Dsui_2595 at 2751.458 kb on + strand at 2751.458 kb on + strand, within Dsui_2595 at 2751.524 kb on - strand at 2751.664 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.707 kb on + strand at 2751.728 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.784 kb on - strand at 2751.792 kb on - strand, within Dsui_2596 at 2751.795 kb on + strand, within Dsui_2596 at 2751.795 kb on + strand, within Dsui_2596 at 2751.803 kb on - strand at 2751.817 kb on + strand, within Dsui_2596 at 2751.891 kb on - strand, within Dsui_2596 at 2751.891 kb on - strand, within Dsui_2596 at 2751.909 kb on + strand, within Dsui_2596 at 2751.909 kb on + strand, within Dsui_2596 at 2751.922 kb on + strand, within Dsui_2596 at 2751.983 kb on + strand, within Dsui_2596 at 2751.983 kb on + strand, within Dsui_2596 at 2751.992 kb on - strand, within Dsui_2596 at 2752.020 kb on + strand, within Dsui_2596 at 2752.036 kb on + strand, within Dsui_2596 at 2752.041 kb on + strand, within Dsui_2596 at 2752.075 kb on + strand, within Dsui_2596 at 2752.089 kb on - strand, within Dsui_2596 at 2752.134 kb on + strand, within Dsui_2596 at 2752.259 kb on + strand, within Dsui_2596 at 2752.267 kb on - strand, within Dsui_2596 at 2752.360 kb on + strand at 2752.373 kb on + strand at 2752.453 kb on - strand at 2752.459 kb on - strand at 2752.464 kb on - strand at 2752.465 kb on - strand at 2752.497 kb on - strand at 2752.502 kb on - strand at 2752.532 kb on + strand at 2752.548 kb on - strand, within Dsui_2597 at 2752.568 kb on + strand, within Dsui_2597 at 2752.634 kb on + strand, within Dsui_2597 at 2752.761 kb on - strand, within Dsui_2597 at 2752.785 kb on + strand, within Dsui_2597 at 2752.832 kb on - strand, within Dsui_2597 at 2752.859 kb on + strand, within Dsui_2597 at 2752.867 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.911 kb on + strand, within Dsui_2597 at 2752.920 kb on + strand, within Dsui_2597 at 2752.968 kb on + strand, within Dsui_2597 at 2752.983 kb on - strand, within Dsui_2597 at 2753.014 kb on + strand, within Dsui_2597 at 2753.022 kb on - strand, within Dsui_2597 at 2753.134 kb on - strand, within Dsui_2597 at 2753.166 kb on + strand, within Dsui_2597 at 2753.179 kb on - strand, within Dsui_2597
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,750,772 - Dsui_2595 0.36 +0.3 2,750,885 - Dsui_2595 0.45 -0.7 2,750,887 + Dsui_2595 0.45 -0.7 2,750,900 - Dsui_2595 0.46 +0.3 2,751,001 + Dsui_2595 0.53 +0.3 2,751,144 - Dsui_2595 0.63 -1.2 2,751,171 + Dsui_2595 0.65 +0.3 2,751,179 - Dsui_2595 0.66 -0.7 2,751,205 - Dsui_2595 0.68 +0.3 2,751,272 + Dsui_2595 0.73 -1.7 2,751,332 + Dsui_2595 0.77 +0.3 2,751,333 + Dsui_2595 0.77 -2.5 2,751,458 + +0.3 2,751,458 + Dsui_2595 0.86 -2.2 2,751,524 - +0.3 2,751,664 + +0.2 2,751,675 + +0.9 2,751,675 + -0.4 2,751,675 + -0.4 2,751,675 + -0.5 2,751,675 + -0.4 2,751,707 + -1.7 2,751,728 + -2.6 2,751,776 + +0.3 2,751,776 + +0.3 2,751,776 + -0.7 2,751,776 + -2.0 2,751,776 + -0.7 2,751,776 + -0.7 2,751,784 - +0.3 2,751,792 - Dsui_2596 0.12 -1.3 2,751,795 + Dsui_2596 0.13 -1.7 2,751,795 + Dsui_2596 0.13 +0.3 2,751,803 - +0.3 2,751,817 + Dsui_2596 0.16 +0.3 2,751,891 - Dsui_2596 0.26 -1.3 2,751,891 - Dsui_2596 0.26 +0.3 2,751,909 + Dsui_2596 0.29 -0.7 2,751,909 + Dsui_2596 0.29 -0.7 2,751,922 + Dsui_2596 0.31 +0.3 2,751,983 + Dsui_2596 0.39 -0.7 2,751,983 + Dsui_2596 0.39 -1.8 2,751,992 - Dsui_2596 0.41 -1.3 2,752,020 + Dsui_2596 0.45 -1.7 2,752,036 + Dsui_2596 0.47 -0.7 2,752,041 + Dsui_2596 0.48 -0.7 2,752,075 + Dsui_2596 0.52 +0.3 2,752,089 - Dsui_2596 0.54 -1.3 2,752,134 + Dsui_2596 0.61 -1.3 2,752,259 + Dsui_2596 0.79 -0.7 2,752,267 - Dsui_2596 0.80 +0.3 2,752,360 + +0.3 2,752,373 + +0.3 2,752,453 - -0.7 2,752,459 - -0.7 2,752,464 - +0.5 2,752,465 - -1.3 2,752,497 - -2.7 2,752,502 - +0.3 2,752,532 + +0.3 2,752,548 - Dsui_2597 0.12 -1.7 2,752,568 + Dsui_2597 0.14 -1.7 2,752,634 + Dsui_2597 0.21 -1.3 2,752,761 - Dsui_2597 0.35 -0.7 2,752,785 + Dsui_2597 0.38 +0.3 2,752,832 - Dsui_2597 0.43 +0.3 2,752,859 + Dsui_2597 0.46 +0.3 2,752,867 - Dsui_2597 0.47 -0.7 2,752,889 - Dsui_2597 0.49 +0.3 2,752,889 - Dsui_2597 0.49 +0.3 2,752,889 - Dsui_2597 0.49 +0.3 2,752,895 - Dsui_2597 0.50 -0.7 2,752,895 - Dsui_2597 0.50 -0.7 2,752,895 - Dsui_2597 0.50 -0.3 2,752,911 + Dsui_2597 0.51 +0.3 2,752,920 + Dsui_2597 0.52 -0.7 2,752,968 + Dsui_2597 0.58 +0.3 2,752,983 - Dsui_2597 0.59 -2.0 2,753,014 + Dsui_2597 0.63 +0.3 2,753,022 - Dsui_2597 0.63 +0.3 2,753,134 - Dsui_2597 0.76 +0.3 2,753,166 + Dsui_2597 0.79 +0.3 2,753,179 - Dsui_2597 0.81 +0.3
Or see this region's nucleotide sequence