Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2480 and Dsui_2481 overlap by 4 nucleotides Dsui_2481 and Dsui_2482 are separated by 71 nucleotides Dsui_2482 and Dsui_2483 overlap by 11 nucleotides Dsui_2483 and Dsui_2484 are separated by 28 nucleotides
Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753
_2480
Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469
_2481
Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993
_2482
Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711
_2483
Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543
_2484
Position (kb)
2632
2633 Strain fitness (log2 ratio)
-1
0
1 at 2631.663 kb on + strand at 2631.734 kb on - strand at 2632.499 kb on - strand at 2632.524 kb on - strand at 2632.524 kb on - strand at 2632.545 kb on - strand at 2632.975 kb on - strand at 2632.998 kb on - strand at 2633.732 kb on - strand at 2633.755 kb on - strand at 2633.758 kb on - strand at 2633.775 kb on - strand at 2633.829 kb on - strand, within Dsui_2484
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,631,663 + -0.7 2,631,734 - +0.0 2,632,499 - -0.3 2,632,524 - +0.2 2,632,524 - -0.1 2,632,545 - +0.0 2,632,975 - -0.1 2,632,998 - +0.4 2,633,732 - -0.1 2,633,755 - -0.1 2,633,758 - +0.3 2,633,775 - -0.0 2,633,829 - Dsui_2484 0.11 -0.5
Or see this region's nucleotide sequence