Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2457 and Dsui_2458 are separated by 11 nucleotides Dsui_2458 and Dsui_2459 are separated by 16 nucleotides Dsui_2459 and Dsui_2460 overlap by 8 nucleotides Dsui_2460 and Dsui_2461 overlap by 4 nucleotides
Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850
_2457
Dsui_2458: Dsui_2458 - signal peptidase I, at 2,616,862 to 2,617,650
_2458
Dsui_2459: Dsui_2459 - hypothetical protein, at 2,617,667 to 2,618,038
_2459
Dsui_2460: Dsui_2460 - ribonuclease III, at 2,618,031 to 2,618,723
_2460
Dsui_2461: Dsui_2461 - GTP-binding protein Era, at 2,618,720 to 2,619,613
_2461
Position (kb)
2617
2618
2619 Strain fitness (log2 ratio)
-1
0
1 at 2617.649 kb on + strand at 2617.670 kb on - strand at 2617.873 kb on + strand, within Dsui_2459 at 2617.887 kb on + strand, within Dsui_2459 at 2618.023 kb on + strand at 2618.023 kb on + strand at 2618.023 kb on + strand at 2618.031 kb on - strand at 2618.031 kb on - strand at 2618.031 kb on - strand at 2618.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,617,649 + +0.3 2,617,670 - +0.3 2,617,873 + Dsui_2459 0.55 -0.1 2,617,887 + Dsui_2459 0.59 -1.3 2,618,023 + +0.2 2,618,023 + -0.1 2,618,023 + -0.3 2,618,031 - -0.7 2,618,031 - -0.7 2,618,031 - -0.7 2,618,031 - +0.3
Or see this region's nucleotide sequence