Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2434 and Dsui_2435 overlap by 4 nucleotides Dsui_2435 and Dsui_2436 are separated by 88 nucleotides
Dsui_2434: Dsui_2434 - excinuclease ABC, B subunit, at 2,593,292 to 2,595,364
_2434
Dsui_2435: Dsui_2435 - protein-tyrosine-phosphatase, at 2,595,361 to 2,595,888
_2435
Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739
_2436
Position (kb)
2595
2596 Strain fitness (log2 ratio)
-2
-1
0
1 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.397 kb on - strand at 2594.397 kb on - strand at 2594.445 kb on + strand, within Dsui_2434 at 2594.535 kb on + strand, within Dsui_2434 at 2594.580 kb on + strand, within Dsui_2434 at 2594.612 kb on + strand, within Dsui_2434 at 2594.627 kb on + strand, within Dsui_2434 at 2594.667 kb on + strand, within Dsui_2434 at 2594.686 kb on + strand, within Dsui_2434 at 2594.711 kb on + strand, within Dsui_2434 at 2594.711 kb on + strand, within Dsui_2434 at 2594.753 kb on - strand, within Dsui_2434 at 2594.767 kb on + strand, within Dsui_2434 at 2594.798 kb on - strand, within Dsui_2434 at 2594.799 kb on - strand, within Dsui_2434 at 2594.861 kb on + strand, within Dsui_2434 at 2594.861 kb on + strand, within Dsui_2434 at 2594.871 kb on + strand, within Dsui_2434 at 2595.157 kb on + strand at 2595.161 kb on + strand at 2595.225 kb on - strand at 2595.260 kb on + strand at 2595.266 kb on + strand at 2595.312 kb on + strand at 2595.351 kb on + strand at 2595.361 kb on - strand at 2595.363 kb on + strand at 2595.388 kb on + strand at 2595.396 kb on - strand at 2595.518 kb on + strand, within Dsui_2435 at 2595.556 kb on - strand, within Dsui_2435 at 2595.556 kb on - strand, within Dsui_2435 at 2595.620 kb on + strand, within Dsui_2435 at 2595.680 kb on + strand, within Dsui_2435 at 2595.680 kb on + strand, within Dsui_2435 at 2595.748 kb on - strand, within Dsui_2435 at 2595.769 kb on + strand, within Dsui_2435 at 2595.779 kb on + strand, within Dsui_2435 at 2595.859 kb on + strand at 2595.865 kb on + strand at 2595.882 kb on + strand at 2595.936 kb on + strand at 2595.944 kb on + strand at 2595.968 kb on + strand at 2596.027 kb on - strand at 2596.074 kb on + strand at 2596.098 kb on - strand at 2596.162 kb on - strand at 2596.206 kb on - strand at 2596.234 kb on - strand at 2596.253 kb on - strand at 2596.271 kb on - strand, within Dsui_2436 at 2596.453 kb on + strand, within Dsui_2436 at 2596.484 kb on - strand, within Dsui_2436 at 2596.588 kb on - strand, within Dsui_2436 at 2596.637 kb on + strand, within Dsui_2436 at 2596.662 kb on + strand at 2596.718 kb on - strand, within Dsui_2436 at 2596.754 kb on - strand, within Dsui_2436 at 2596.754 kb on - strand, within Dsui_2436 at 2596.769 kb on - strand, within Dsui_2436
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,594,389 + Dsui_2434 0.53 -0.8 2,594,389 + Dsui_2434 0.53 -0.3 2,594,389 + Dsui_2434 0.53 -0.5 2,594,389 + Dsui_2434 0.53 -0.1 2,594,389 + Dsui_2434 0.53 -0.5 2,594,389 + Dsui_2434 0.53 -0.4 2,594,397 - +0.3 2,594,397 - +0.3 2,594,445 + Dsui_2434 0.56 -0.2 2,594,535 + Dsui_2434 0.60 -0.4 2,594,580 + Dsui_2434 0.62 +1.2 2,594,612 + Dsui_2434 0.64 -0.3 2,594,627 + Dsui_2434 0.64 -1.2 2,594,667 + Dsui_2434 0.66 +0.8 2,594,686 + Dsui_2434 0.67 -0.6 2,594,711 + Dsui_2434 0.68 +0.3 2,594,711 + Dsui_2434 0.68 -0.4 2,594,753 - Dsui_2434 0.70 -1.2 2,594,767 + Dsui_2434 0.71 -1.2 2,594,798 - Dsui_2434 0.73 +0.3 2,594,799 - Dsui_2434 0.73 -2.0 2,594,861 + Dsui_2434 0.76 -0.2 2,594,861 + Dsui_2434 0.76 +0.1 2,594,871 + Dsui_2434 0.76 -1.0 2,595,157 + -0.3 2,595,161 + -0.3 2,595,225 - -2.0 2,595,260 + -0.0 2,595,266 + +0.7 2,595,312 + +0.3 2,595,351 + +0.7 2,595,361 - +0.3 2,595,363 + +0.1 2,595,388 + +0.1 2,595,396 - +0.3 2,595,518 + Dsui_2435 0.30 +0.2 2,595,556 - Dsui_2435 0.37 +0.3 2,595,556 - Dsui_2435 0.37 -0.7 2,595,620 + Dsui_2435 0.49 +0.4 2,595,680 + Dsui_2435 0.60 +0.3 2,595,680 + Dsui_2435 0.60 +0.4 2,595,748 - Dsui_2435 0.73 +0.3 2,595,769 + Dsui_2435 0.77 +0.2 2,595,779 + Dsui_2435 0.79 +0.3 2,595,859 + +0.5 2,595,865 + +0.1 2,595,882 + -0.7 2,595,936 + -0.7 2,595,944 + +0.1 2,595,968 + +0.3 2,596,027 - +0.4 2,596,074 + +0.3 2,596,098 - +0.4 2,596,162 - +0.8 2,596,206 - +0.7 2,596,234 - +0.8 2,596,253 - +0.6 2,596,271 - Dsui_2436 0.11 +1.4 2,596,453 + Dsui_2436 0.17 -2.5 2,596,484 - Dsui_2436 0.18 +0.2 2,596,588 - Dsui_2436 0.22 +0.8 2,596,637 + Dsui_2436 0.24 -1.2 2,596,662 + -1.2 2,596,718 - Dsui_2436 0.27 +0.3 2,596,754 - Dsui_2436 0.28 +0.2 2,596,754 - Dsui_2436 0.28 +1.1 2,596,769 - Dsui_2436 0.29 +1.1
Or see this region's nucleotide sequence