Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2427 and Dsui_2428 are separated by 185 nucleotides Dsui_2428 and Dsui_2429 overlap by 4 nucleotides Dsui_2429 and Dsui_2430 are separated by 127 nucleotides Dsui_2430 and Dsui_2431 are separated by 54 nucleotides Dsui_2431 and Dsui_2432 are separated by 62 nucleotides
Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921
_2427
Dsui_2428: Dsui_2428 - cyclic nucleotide-binding protein, at 2,588,107 to 2,588,583
_2428
Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719
_2429
Dsui_2430: Dsui_2430 - tRNA-Asn, at 2,589,847 to 2,589,922
_2430
Dsui_2431: Dsui_2431 - tRNA-Asn, at 2,589,977 to 2,590,052
_2431
Dsui_2432: Dsui_2432 - hypothetical protein, at 2,590,115 to 2,591,863
_2432
Position (kb)
2588
2589
2590 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2587.600 kb on + strand at 2587.608 kb on - strand, within Dsui_2427 at 2587.652 kb on + strand, within Dsui_2427 at 2587.656 kb on - strand, within Dsui_2427 at 2587.696 kb on + strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.739 kb on - strand, within Dsui_2427 at 2587.787 kb on - strand, within Dsui_2427 at 2587.857 kb on - strand at 2587.916 kb on - strand at 2588.223 kb on + strand, within Dsui_2428 at 2588.287 kb on - strand at 2588.332 kb on + strand, within Dsui_2428 at 2588.401 kb on + strand, within Dsui_2428 at 2588.540 kb on + strand at 2588.543 kb on - strand at 2588.610 kb on - strand at 2588.662 kb on + strand at 2588.667 kb on + strand at 2588.678 kb on - strand at 2588.695 kb on + strand, within Dsui_2429 at 2588.739 kb on + strand, within Dsui_2429 at 2588.964 kb on - strand at 2588.969 kb on + strand, within Dsui_2429 at 2588.984 kb on + strand at 2588.987 kb on - strand, within Dsui_2429 at 2589.034 kb on + strand, within Dsui_2429 at 2589.034 kb on - strand at 2589.062 kb on + strand at 2589.184 kb on + strand, within Dsui_2429 at 2589.184 kb on + strand, within Dsui_2429 at 2589.184 kb on + strand, within Dsui_2429 at 2589.192 kb on - strand at 2589.192 kb on - strand at 2589.244 kb on + strand at 2589.248 kb on + strand, within Dsui_2429 at 2589.252 kb on - strand at 2589.262 kb on + strand, within Dsui_2429 at 2589.270 kb on - strand, within Dsui_2429 at 2589.272 kb on + strand, within Dsui_2429 at 2589.290 kb on + strand, within Dsui_2429 at 2589.348 kb on + strand, within Dsui_2429 at 2589.371 kb on - strand, within Dsui_2429 at 2589.433 kb on - strand at 2589.513 kb on - strand at 2589.625 kb on + strand at 2589.664 kb on + strand at 2589.891 kb on - strand, within Dsui_2430 at 2589.938 kb on - strand at 2590.205 kb on + strand at 2590.205 kb on + strand at 2590.205 kb on + strand at 2590.440 kb on - strand at 2590.672 kb on - strand at 2590.706 kb on + strand, within Dsui_2432 at 2590.706 kb on + strand, within Dsui_2432 at 2590.712 kb on + strand, within Dsui_2432 at 2590.717 kb on + strand, within Dsui_2432
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,587,600 + +0.3 2,587,608 - Dsui_2427 0.71 -0.3 2,587,652 + Dsui_2427 0.75 -1.7 2,587,656 - Dsui_2427 0.75 -0.6 2,587,696 + Dsui_2427 0.79 -0.7 2,587,704 - Dsui_2427 0.80 -1.2 2,587,704 - Dsui_2427 0.80 +0.2 2,587,704 - Dsui_2427 0.80 -0.4 2,587,739 - Dsui_2427 0.83 -0.2 2,587,787 - Dsui_2427 0.87 -0.4 2,587,857 - +0.5 2,587,916 - -0.5 2,588,223 + Dsui_2428 0.24 -0.7 2,588,287 - -1.7 2,588,332 + Dsui_2428 0.47 -0.7 2,588,401 + Dsui_2428 0.62 +0.3 2,588,540 + -0.7 2,588,543 - -0.7 2,588,610 - -0.7 2,588,662 + -1.7 2,588,667 + +0.3 2,588,678 - +0.3 2,588,695 + Dsui_2429 0.10 -2.0 2,588,739 + Dsui_2429 0.14 +0.3 2,588,964 - +0.3 2,588,969 + Dsui_2429 0.34 -2.0 2,588,984 + -0.7 2,588,987 - Dsui_2429 0.36 +0.3 2,589,034 + Dsui_2429 0.40 -2.7 2,589,034 - +0.3 2,589,062 + +0.3 2,589,184 + Dsui_2429 0.53 -0.7 2,589,184 + Dsui_2429 0.53 -1.2 2,589,184 + Dsui_2429 0.53 -1.2 2,589,192 - -0.7 2,589,192 - -1.2 2,589,244 + +0.3 2,589,248 + Dsui_2429 0.59 -0.7 2,589,252 - +0.3 2,589,262 + Dsui_2429 0.60 -1.7 2,589,270 - Dsui_2429 0.61 -0.7 2,589,272 + Dsui_2429 0.61 -2.0 2,589,290 + Dsui_2429 0.62 -1.2 2,589,348 + Dsui_2429 0.67 -1.7 2,589,371 - Dsui_2429 0.69 -1.2 2,589,433 - -1.2 2,589,513 - -1.7 2,589,625 + +0.3 2,589,664 + -0.7 2,589,891 - Dsui_2430 0.58 +0.2 2,589,938 - +0.2 2,590,205 + -3.0 2,590,205 + +0.3 2,590,205 + -1.2 2,590,440 - +0.3 2,590,672 - -1.2 2,590,706 + Dsui_2432 0.34 -2.0 2,590,706 + Dsui_2432 0.34 -1.2 2,590,712 + Dsui_2432 0.34 +0.3 2,590,717 + Dsui_2432 0.34 -1.7
Or see this region's nucleotide sequence