Strain Fitness in Dechlorosoma suillum PS around Dsui_2414

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2413 and Dsui_2414 are separated by 102 nucleotidesDsui_2414 and Dsui_2415 are separated by 168 nucleotides Dsui_2413: Dsui_2413 - DNA repair protein RadA, at 2,566,338 to 2,567,711 _2413 Dsui_2414: Dsui_2414 - hypothetical protein, at 2,567,814 to 2,568,419 _2414 Dsui_2415: Dsui_2415 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 2,568,588 to 2,571,089 _2415 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -2 -1 0 1at 2566.908 kb on + strand, within Dsui_2413at 2567.153 kb on + strand, within Dsui_2413at 2567.200 kb on + strand, within Dsui_2413at 2567.355 kb on + strand, within Dsui_2413at 2567.419 kb on + strand, within Dsui_2413at 2567.420 kb on + strand, within Dsui_2413at 2567.716 kb on + strandat 2567.811 kb on + strandat 2567.957 kb on + strandat 2567.965 kb on + strand, within Dsui_2414at 2567.965 kb on + strand, within Dsui_2414at 2567.984 kb on - strandat 2567.984 kb on - strandat 2568.015 kb on + strandat 2568.159 kb on - strandat 2568.219 kb on + strandat 2568.229 kb on + strandat 2568.286 kb on + strandat 2568.418 kb on - strandat 2568.535 kb on + strandat 2568.540 kb on + strandat 2568.540 kb on + strandat 2568.540 kb on + strandat 2568.619 kb on + strandat 2568.651 kb on + strandat 2568.651 kb on + strandat 2568.652 kb on + strandat 2568.680 kb on + strandat 2568.726 kb on + strandat 2568.940 kb on + strand, within Dsui_2415at 2568.979 kb on + strandat 2568.994 kb on + strand, within Dsui_2415at 2569.036 kb on + strandat 2569.059 kb on + strandat 2569.059 kb on + strand, within Dsui_2415at 2569.059 kb on + strand, within Dsui_2415at 2569.271 kb on + strand, within Dsui_2415at 2569.339 kb on - strand, within Dsui_2415

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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2,566,908 + Dsui_2413 0.41 +0.2
2,567,153 + Dsui_2413 0.59 +0.2
2,567,200 + Dsui_2413 0.63 -0.3
2,567,355 + Dsui_2413 0.74 +0.2
2,567,419 + Dsui_2413 0.79 -0.4
2,567,420 + Dsui_2413 0.79 +0.0
2,567,716 + -0.1
2,567,811 + +0.3
2,567,957 + +0.3
2,567,965 + Dsui_2414 0.25 +0.3
2,567,965 + Dsui_2414 0.25 -0.7
2,567,984 - +0.3
2,567,984 - -1.2
2,568,015 + -0.7
2,568,159 - +0.3
2,568,219 + +0.3
2,568,229 + +0.3
2,568,286 + +0.3
2,568,418 - -1.2
2,568,535 + +0.3
2,568,540 + +0.3
2,568,540 + -0.7
2,568,540 + -2.0
2,568,619 + +0.3
2,568,651 + +0.3
2,568,651 + +0.3
2,568,652 + -1.2
2,568,680 + -1.2
2,568,726 + +0.3
2,568,940 + Dsui_2415 0.14 +0.3
2,568,979 + -0.7
2,568,994 + Dsui_2415 0.16 -0.7
2,569,036 + +0.3
2,569,059 + +0.3
2,569,059 + Dsui_2415 0.19 -1.2
2,569,059 + Dsui_2415 0.19 +0.3
2,569,271 + Dsui_2415 0.27 +0.3
2,569,339 - Dsui_2415 0.30 -0.4

Or see this region's nucleotide sequence