Strain Fitness in Dechlorosoma suillum PS around Dsui_2410

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2409 and Dsui_2410 are separated by 198 nucleotidesDsui_2410 and Dsui_2411 are separated by 121 nucleotides Dsui_2409: Dsui_2409 - Major Facilitator Superfamily transporter, at 2,559,861 to 2,561,126 _2409 Dsui_2410: Dsui_2410 - transcriptional regulator, at 2,561,325 to 2,562,227 _2410 Dsui_2411: Dsui_2411 - alanine racemase, at 2,562,349 to 2,563,440 _2411 Position (kb) 2561 2562 2563Strain fitness (log2 ratio) -1 0 1at 2561.159 kb on - strandat 2561.193 kb on - strandat 2561.200 kb on - strandat 2561.200 kb on - strandat 2561.388 kb on + strandat 2561.396 kb on + strandat 2561.401 kb on + strandat 2561.422 kb on + strand, within Dsui_2410at 2561.519 kb on + strand, within Dsui_2410at 2561.596 kb on + strand, within Dsui_2410at 2561.649 kb on + strand, within Dsui_2410at 2561.743 kb on + strand, within Dsui_2410at 2561.743 kb on + strand, within Dsui_2410at 2561.743 kb on + strand, within Dsui_2410at 2561.748 kb on + strand, within Dsui_2410at 2561.874 kb on + strand, within Dsui_2410at 2561.923 kb on + strand, within Dsui_2410at 2561.923 kb on + strand, within Dsui_2410at 2561.923 kb on + strand, within Dsui_2410at 2561.954 kb on + strand, within Dsui_2410at 2562.011 kb on + strand, within Dsui_2410at 2562.034 kb on + strand, within Dsui_2410at 2562.054 kb on + strand, within Dsui_2410at 2562.075 kb on + strand, within Dsui_2410at 2562.107 kb on + strand, within Dsui_2410at 2562.128 kb on + strand, within Dsui_2410at 2562.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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2,561,159 - +0.4
2,561,193 - +0.4
2,561,200 - +0.2
2,561,200 - +0.6
2,561,388 + +0.4
2,561,396 + -0.3
2,561,401 + -0.1
2,561,422 + Dsui_2410 0.11 -0.6
2,561,519 + Dsui_2410 0.21 -1.2
2,561,596 + Dsui_2410 0.30 +0.1
2,561,649 + Dsui_2410 0.36 -0.2
2,561,743 + Dsui_2410 0.46 -1.1
2,561,743 + Dsui_2410 0.46 -0.1
2,561,743 + Dsui_2410 0.46 -0.3
2,561,748 + Dsui_2410 0.47 -0.2
2,561,874 + Dsui_2410 0.61 -0.5
2,561,923 + Dsui_2410 0.66 -0.4
2,561,923 + Dsui_2410 0.66 +0.7
2,561,923 + Dsui_2410 0.66 +0.0
2,561,954 + Dsui_2410 0.70 +1.1
2,562,011 + Dsui_2410 0.76 +0.3
2,562,034 + Dsui_2410 0.79 -0.3
2,562,054 + Dsui_2410 0.81 -1.1
2,562,075 + Dsui_2410 0.83 -1.7
2,562,107 + Dsui_2410 0.87 +0.3
2,562,128 + Dsui_2410 0.89 -0.4
2,562,220 - +0.3

Or see this region's nucleotide sequence