Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2391 and Dsui_2392 are separated by 2 nucleotides Dsui_2392 and Dsui_2393 overlap by 4 nucleotides Dsui_2393 and Dsui_2394 are separated by 3 nucleotides
Dsui_2391: Dsui_2391 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 2,543,525 to 2,544,013
_2391
Dsui_2392: Dsui_2392 - 2''-5'' RNA ligase, at 2,544,016 to 2,544,591
_2392
Dsui_2393: Dsui_2393 - uncharacterized domain HDIG-containing protein, at 2,544,588 to 2,545,811
_2393
Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775
_2394
Position (kb)
2544
2545
2546 Strain fitness (log2 ratio)
-1
0
1 at 2544.017 kb on + strand at 2544.162 kb on - strand at 2544.192 kb on + strand, within Dsui_2392 at 2544.221 kb on - strand at 2544.255 kb on - strand at 2544.255 kb on - strand at 2544.315 kb on + strand, within Dsui_2392 at 2544.524 kb on + strand, within Dsui_2392 at 2544.574 kb on + strand at 2544.776 kb on - strand at 2544.896 kb on + strand, within Dsui_2393 at 2545.080 kb on + strand, within Dsui_2393 at 2545.309 kb on + strand, within Dsui_2393 at 2545.312 kb on + strand, within Dsui_2393 at 2545.444 kb on - strand at 2545.653 kb on + strand, within Dsui_2393 at 2545.871 kb on - strand at 2545.927 kb on + strand at 2545.970 kb on - strand at 2545.970 kb on - strand at 2545.974 kb on - strand at 2546.012 kb on + strand at 2546.098 kb on + strand at 2546.105 kb on + strand at 2546.438 kb on + strand, within Dsui_2394 at 2546.463 kb on + strand, within Dsui_2394 at 2546.533 kb on - strand at 2546.548 kb on + strand, within Dsui_2394
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,544,017 + -0.2 2,544,162 - -0.7 2,544,192 + Dsui_2392 0.31 +0.1 2,544,221 - +0.3 2,544,255 - +0.3 2,544,255 - -0.7 2,544,315 + Dsui_2392 0.52 +0.4 2,544,524 + Dsui_2392 0.88 -0.0 2,544,574 + +0.1 2,544,776 - -1.2 2,544,896 + Dsui_2393 0.25 +1.2 2,545,080 + Dsui_2393 0.40 +0.1 2,545,309 + Dsui_2393 0.59 +0.3 2,545,312 + Dsui_2393 0.59 +0.1 2,545,444 - +0.3 2,545,653 + Dsui_2393 0.87 -0.2 2,545,871 - +0.3 2,545,927 + -0.2 2,545,970 - -0.7 2,545,970 - -0.7 2,545,974 - -0.7 2,546,012 + -0.5 2,546,098 + +0.1 2,546,105 + +0.3 2,546,438 + Dsui_2394 0.21 -0.1 2,546,463 + Dsui_2394 0.22 -0.1 2,546,533 - +0.3 2,546,548 + Dsui_2394 0.25 -0.1
Or see this region's nucleotide sequence