Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2322 and Dsui_2323 are separated by 3 nucleotides Dsui_2323 and Dsui_2324 are separated by 54 nucleotides Dsui_2324 and Dsui_2325 are separated by 70 nucleotides Dsui_2325 and Dsui_2326 are separated by 151 nucleotides Dsui_2326 and Dsui_2327 are separated by 90 nucleotides
Dsui_2322: Dsui_2322 - hypothetical protein, at 2,478,192 to 2,478,968
_2322
Dsui_2323: Dsui_2323 - protein of unknown function (DUF1857), at 2,478,972 to 2,479,445
_2323
Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868
_2324
Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343
_2325
Dsui_2326: Dsui_2326 - hypothetical protein, at 2,480,495 to 2,480,734
_2326
Dsui_2327: Dsui_2327 - putative toxin-antitoxin system toxin component, PIN family, at 2,480,825 to 2,481,295
_2327
Position (kb)
2479
2480
2481 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2478.956 kb on + strand at 2478.970 kb on - strand at 2479.043 kb on + strand, within Dsui_2323 at 2479.096 kb on + strand, within Dsui_2323 at 2479.108 kb on - strand at 2479.170 kb on + strand, within Dsui_2323 at 2479.228 kb on + strand, within Dsui_2323 at 2479.354 kb on + strand, within Dsui_2323 at 2479.374 kb on + strand, within Dsui_2323 at 2479.399 kb on + strand at 2479.407 kb on - strand at 2479.435 kb on + strand at 2479.570 kb on - strand, within Dsui_2324 at 2479.600 kb on + strand, within Dsui_2324 at 2479.673 kb on + strand, within Dsui_2324 at 2479.712 kb on + strand, within Dsui_2324 at 2479.753 kb on + strand, within Dsui_2324 at 2479.795 kb on - strand, within Dsui_2324 at 2479.837 kb on + strand at 2479.884 kb on - strand at 2480.024 kb on + strand at 2480.202 kb on - strand, within Dsui_2325 at 2480.207 kb on - strand, within Dsui_2325 at 2480.238 kb on - strand, within Dsui_2325 at 2480.257 kb on - strand, within Dsui_2325 at 2480.288 kb on + strand at 2480.296 kb on - strand, within Dsui_2325 at 2480.419 kb on - strand at 2480.706 kb on - strand, within Dsui_2326 at 2480.745 kb on - strand at 2481.077 kb on - strand, within Dsui_2327 at 2481.197 kb on + strand at 2481.230 kb on + strand at 2481.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,478,956 + -1.3 2,478,970 - -0.7 2,479,043 + Dsui_2323 0.15 -0.9 2,479,096 + Dsui_2323 0.26 -1.3 2,479,108 - +0.3 2,479,170 + Dsui_2323 0.42 +0.3 2,479,228 + Dsui_2323 0.54 +1.3 2,479,354 + Dsui_2323 0.81 -0.7 2,479,374 + Dsui_2323 0.85 -1.1 2,479,399 + -0.7 2,479,407 - +0.3 2,479,435 + -0.4 2,479,570 - Dsui_2324 0.19 -0.7 2,479,600 + Dsui_2324 0.27 -0.6 2,479,673 + Dsui_2324 0.47 -0.4 2,479,712 + Dsui_2324 0.57 -3.3 2,479,753 + Dsui_2324 0.69 +0.1 2,479,795 - Dsui_2324 0.80 -1.3 2,479,837 + -0.2 2,479,884 - -2.0 2,480,024 + -0.7 2,480,202 - Dsui_2325 0.65 -1.3 2,480,207 - Dsui_2325 0.66 -2.3 2,480,238 - Dsui_2325 0.74 -0.7 2,480,257 - Dsui_2325 0.79 -1.5 2,480,288 + -0.7 2,480,296 - Dsui_2325 0.88 -2.0 2,480,419 - +0.7 2,480,706 - Dsui_2326 0.88 -0.2 2,480,745 - +0.4 2,481,077 - Dsui_2327 0.54 -0.7 2,481,197 + -0.6 2,481,230 + +0.4 2,481,268 - +1.9
Or see this region's nucleotide sequence