Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2320 and Dsui_2321 are separated by 52 nucleotides Dsui_2321 and Dsui_2322 are separated by 45 nucleotides Dsui_2322 and Dsui_2323 are separated by 3 nucleotides
Dsui_2320: Dsui_2320 - Protein of unknown function (DUF2863), at 2,474,840 to 2,476,018
_2320
Dsui_2321: Dsui_2321 - site-specific recombinase, at 2,476,071 to 2,478,146
_2321
Dsui_2322: Dsui_2322 - hypothetical protein, at 2,478,192 to 2,478,968
_2322
Dsui_2323: Dsui_2323 - protein of unknown function (DUF1857), at 2,478,972 to 2,479,445
_2323
Position (kb)
2476
2477
2478
2479 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2475.103 kb on - strand, within Dsui_2320 at 2475.220 kb on + strand, within Dsui_2320 at 2475.376 kb on + strand, within Dsui_2320 at 2475.532 kb on + strand at 2475.598 kb on + strand at 2475.631 kb on + strand, within Dsui_2320 at 2475.698 kb on + strand at 2475.734 kb on + strand, within Dsui_2320 at 2475.830 kb on + strand at 2475.911 kb on - strand at 2475.981 kb on - strand at 2475.981 kb on - strand at 2476.020 kb on + strand at 2476.020 kb on + strand at 2476.028 kb on - strand at 2476.038 kb on - strand at 2476.051 kb on - strand at 2476.134 kb on + strand at 2476.344 kb on - strand, within Dsui_2321 at 2476.763 kb on - strand, within Dsui_2321 at 2476.937 kb on - strand, within Dsui_2321 at 2476.985 kb on + strand at 2477.021 kb on + strand at 2477.091 kb on + strand at 2477.165 kb on + strand, within Dsui_2321 at 2477.481 kb on - strand, within Dsui_2321 at 2477.500 kb on - strand, within Dsui_2321 at 2477.500 kb on - strand, within Dsui_2321 at 2477.515 kb on - strand, within Dsui_2321 at 2477.579 kb on + strand at 2477.625 kb on + strand at 2477.700 kb on - strand, within Dsui_2321 at 2477.701 kb on - strand, within Dsui_2321 at 2477.702 kb on - strand, within Dsui_2321 at 2477.705 kb on - strand, within Dsui_2321 at 2477.779 kb on + strand at 2477.808 kb on + strand at 2478.051 kb on - strand at 2478.129 kb on - strand at 2478.247 kb on + strand at 2478.377 kb on + strand, within Dsui_2322 at 2478.382 kb on + strand, within Dsui_2322 at 2478.415 kb on + strand, within Dsui_2322 at 2478.532 kb on - strand, within Dsui_2322 at 2478.568 kb on - strand, within Dsui_2322 at 2478.574 kb on - strand, within Dsui_2322 at 2478.593 kb on + strand, within Dsui_2322 at 2478.617 kb on + strand, within Dsui_2322 at 2478.625 kb on - strand at 2478.673 kb on + strand, within Dsui_2322 at 2478.682 kb on + strand, within Dsui_2322 at 2478.724 kb on - strand, within Dsui_2322 at 2478.749 kb on - strand, within Dsui_2322 at 2478.776 kb on + strand, within Dsui_2322 at 2478.837 kb on - strand at 2478.858 kb on + strand, within Dsui_2322 at 2478.877 kb on + strand, within Dsui_2322 at 2478.909 kb on - strand at 2478.956 kb on + strand at 2478.970 kb on - strand at 2479.043 kb on + strand, within Dsui_2323 at 2479.096 kb on + strand, within Dsui_2323 at 2479.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,475,103 - Dsui_2320 0.22 +0.0 2,475,220 + Dsui_2320 0.32 +0.3 2,475,376 + Dsui_2320 0.45 -2.3 2,475,532 + +0.3 2,475,598 + -0.7 2,475,631 + Dsui_2320 0.67 -2.5 2,475,698 + +0.3 2,475,734 + Dsui_2320 0.76 +0.3 2,475,830 + +0.3 2,475,911 - +0.0 2,475,981 - -0.1 2,475,981 - +0.3 2,476,020 + +0.3 2,476,020 + +0.3 2,476,028 - -0.0 2,476,038 - +0.2 2,476,051 - -0.0 2,476,134 + +0.3 2,476,344 - Dsui_2321 0.13 +0.3 2,476,763 - Dsui_2321 0.33 -1.7 2,476,937 - Dsui_2321 0.42 -1.5 2,476,985 + -1.7 2,477,021 + -1.3 2,477,091 + +0.3 2,477,165 + Dsui_2321 0.53 -0.7 2,477,481 - Dsui_2321 0.68 -1.3 2,477,500 - Dsui_2321 0.69 +0.3 2,477,500 - Dsui_2321 0.69 -1.7 2,477,515 - Dsui_2321 0.70 -1.4 2,477,579 + -0.7 2,477,625 + +0.3 2,477,700 - Dsui_2321 0.78 -0.7 2,477,701 - Dsui_2321 0.79 -3.1 2,477,702 - Dsui_2321 0.79 -2.9 2,477,705 - Dsui_2321 0.79 -0.7 2,477,779 + -0.7 2,477,808 + -0.7 2,478,051 - -2.0 2,478,129 - -0.7 2,478,247 + -2.5 2,478,377 + Dsui_2322 0.24 +0.1 2,478,382 + Dsui_2322 0.24 -0.7 2,478,415 + Dsui_2322 0.29 -1.3 2,478,532 - Dsui_2322 0.44 -1.3 2,478,568 - Dsui_2322 0.48 -0.7 2,478,574 - Dsui_2322 0.49 -1.3 2,478,593 + Dsui_2322 0.52 -1.2 2,478,617 + Dsui_2322 0.55 -0.7 2,478,625 - +0.3 2,478,673 + Dsui_2322 0.62 -0.7 2,478,682 + Dsui_2322 0.63 -3.1 2,478,724 - Dsui_2322 0.68 -1.3 2,478,749 - Dsui_2322 0.72 +0.3 2,478,776 + Dsui_2322 0.75 -1.7 2,478,837 - +0.3 2,478,858 + Dsui_2322 0.86 -1.7 2,478,877 + Dsui_2322 0.88 -0.7 2,478,909 - -1.3 2,478,956 + -1.3 2,478,970 - -0.7 2,479,043 + Dsui_2323 0.15 -0.9 2,479,096 + Dsui_2323 0.26 -1.3 2,479,108 - +0.3
Or see this region's nucleotide sequence