Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2310 and Dsui_2311 are separated by 40 nucleotides Dsui_2311 and Dsui_2312 are separated by 207 nucleotides Dsui_2312 and Dsui_2313 are separated by 144 nucleotides
Dsui_2310: Dsui_2310 - tRNA 2-selenouridine synthase, at 2,465,925 to 2,467,013
_2310
Dsui_2311: Dsui_2311 - isochorismate hydrolase, at 2,467,054 to 2,467,596
_2311
Dsui_2312: Dsui_2312 - 3-hydroxybutyrate dehydrogenase, at 2,467,804 to 2,468,586
_2312
Dsui_2313: Dsui_2313 - CTP synthase, at 2,468,731 to 2,470,371
_2313
Position (kb)
2467
2468
2469 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2466.827 kb on - strand, within Dsui_2310 at 2466.852 kb on + strand, within Dsui_2310 at 2466.917 kb on + strand at 2466.946 kb on + strand at 2467.049 kb on + strand at 2467.059 kb on + strand at 2467.064 kb on + strand at 2467.128 kb on + strand, within Dsui_2311 at 2467.131 kb on - strand at 2467.169 kb on - strand, within Dsui_2311 at 2467.398 kb on - strand at 2467.553 kb on + strand at 2467.563 kb on + strand at 2467.571 kb on - strand at 2467.787 kb on + strand at 2468.130 kb on + strand, within Dsui_2312 at 2468.138 kb on + strand, within Dsui_2312 at 2468.287 kb on + strand, within Dsui_2312 at 2468.319 kb on - strand at 2468.336 kb on - strand at 2468.410 kb on + strand, within Dsui_2312 at 2468.410 kb on + strand at 2468.410 kb on + strand, within Dsui_2312 at 2468.410 kb on - strand at 2468.410 kb on - strand at 2468.425 kb on + strand, within Dsui_2312 at 2468.591 kb on + strand at 2468.596 kb on + strand at 2468.609 kb on - strand at 2468.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,466,827 - Dsui_2310 0.83 -2.0 2,466,852 + Dsui_2310 0.85 -0.7 2,466,917 + +0.6 2,466,946 + -1.3 2,467,049 + -0.3 2,467,059 + +0.3 2,467,064 + +0.0 2,467,128 + Dsui_2311 0.14 -0.4 2,467,131 - -1.3 2,467,169 - Dsui_2311 0.21 -2.3 2,467,398 - -0.7 2,467,553 + -1.3 2,467,563 + +2.6 2,467,571 - -0.7 2,467,787 + -0.7 2,468,130 + Dsui_2312 0.42 -1.3 2,468,138 + Dsui_2312 0.43 -2.3 2,468,287 + Dsui_2312 0.62 -1.3 2,468,319 - +0.3 2,468,336 - -0.7 2,468,410 + Dsui_2312 0.77 -2.3 2,468,410 + +0.3 2,468,410 + Dsui_2312 0.77 -1.3 2,468,410 - +0.3 2,468,410 - -1.3 2,468,425 + Dsui_2312 0.79 -1.3 2,468,591 + +0.3 2,468,596 + -1.3 2,468,609 - -2.3 2,468,720 + -1.3
Or see this region's nucleotide sequence