Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2273 and Dsui_2274 are separated by 201 nucleotides Dsui_2274 and Dsui_2275 overlap by 17 nucleotides Dsui_2275 and Dsui_2276 are separated by 6 nucleotides Dsui_2276 and Dsui_2277 are separated by 210 nucleotides
Dsui_2273: Dsui_2273 - TonB-dependent siderophore receptor, at 2,424,487 to 2,426,691
_2273
Dsui_2274: Dsui_2274 - hypothetical protein, at 2,426,893 to 2,427,222
_2274
Dsui_2275: Dsui_2275 - putative transcriptional regulator, at 2,427,206 to 2,427,433
_2275
Dsui_2276: Dsui_2276 - Protein of unknown function (DUF2975), at 2,427,440 to 2,427,991
_2276
Dsui_2277: Dsui_2277 - Rhs element Vgr protein, at 2,428,202 to 2,431,027
_2277
Position (kb)
2427
2428 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2426.477 kb on - strand at 2426.498 kb on + strand at 2426.545 kb on - strand at 2426.604 kb on - strand at 2426.604 kb on - strand at 2426.679 kb on - strand at 2426.765 kb on - strand at 2426.880 kb on - strand at 2426.893 kb on - strand at 2426.939 kb on - strand, within Dsui_2274 at 2427.068 kb on - strand at 2427.247 kb on - strand, within Dsui_2275 at 2427.250 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand at 2427.309 kb on + strand at 2427.309 kb on + strand, within Dsui_2275 at 2427.373 kb on + strand at 2427.446 kb on + strand at 2427.449 kb on - strand at 2427.469 kb on + strand at 2427.486 kb on - strand at 2427.793 kb on - strand, within Dsui_2276 at 2427.854 kb on + strand at 2427.878 kb on - strand, within Dsui_2276 at 2427.896 kb on - strand, within Dsui_2276 at 2427.976 kb on + strand at 2427.984 kb on - strand at 2427.997 kb on + strand at 2427.997 kb on + strand at 2428.090 kb on + strand at 2428.090 kb on + strand at 2428.106 kb on - strand at 2428.329 kb on + strand at 2428.545 kb on + strand at 2428.608 kb on - strand at 2428.806 kb on + strand at 2428.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,426,477 - -2.1 2,426,498 + +0.4 2,426,545 - +0.4 2,426,604 - -0.6 2,426,604 - -1.1 2,426,679 - -1.6 2,426,765 - -1.6 2,426,880 - -0.6 2,426,893 - -3.0 2,426,939 - Dsui_2274 0.14 -1.1 2,427,068 - +0.4 2,427,247 - Dsui_2275 0.18 +0.1 2,427,250 + Dsui_2275 0.19 -0.6 2,427,309 + Dsui_2275 0.45 +0.4 2,427,309 + Dsui_2275 0.45 -1.6 2,427,309 + +0.4 2,427,309 + +0.4 2,427,309 + Dsui_2275 0.45 +0.4 2,427,373 + +0.4 2,427,446 + -1.9 2,427,449 - +0.4 2,427,469 + -1.6 2,427,486 - -0.3 2,427,793 - Dsui_2276 0.64 +0.1 2,427,854 + -0.6 2,427,878 - Dsui_2276 0.79 +0.7 2,427,896 - Dsui_2276 0.83 -1.1 2,427,976 + -1.1 2,427,984 - +0.5 2,427,997 + +0.4 2,427,997 + +0.4 2,428,090 + +0.4 2,428,090 + +0.4 2,428,106 - +0.4 2,428,329 + -0.6 2,428,545 + +0.4 2,428,608 - -0.6 2,428,806 + +0.4 2,428,977 - -1.1
Or see this region's nucleotide sequence